[ccp4bb] side chain angle differences between monomers

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

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Subject: Re: problem in transformation of pqe 30 clone
From: bas {- at -} FREESURF {- dot -} FR bas {- at -} FREESURF {- dot -} FR
Date: 2009-05-04

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Subject: Re: problem in transformation of pqe 30 clone
From: Raji Edayathumangalam raji {- at -} BRANDEIS {- dot -} EDU
Date: 2009-05-04

Subject: side chain angle differences between monomers
From: iulek {- at -} INTERPONTA {- dot -} COM {- dot -} BR iulek {- at -} INTERPONTA {- dot -} COM {- dot -} BR
Date: 2009-05-04

Hi all,

I am aware of programs to plot (or analyse) the difference
between the main chain angles of two monomers. I wondered there might
be such facility for side chain angles. I consider this might also be
useful to analyse, e.g., changes in conformation for different
crystals or different ligands in a site, or even to improve selection
of residues for NCS constraints. If there is not such program, I am
inclined to prepare a script to do so; I could be helped by programs
that could, at least, calculate and tabulate the angles. I am aware of
only procheck to do this (partially?), any other?
In summary:
a) Differences between main chain angles, I know of Whatcheck and coot
(with the Kleywegt plot tool);
b) Differences between side chain angles, if not a program for
differences, at least one to tabulate the chi angles (procheck makes
this partially ... ?).

Jorge

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: problem in transformation of pqe 30 clone
From: bas {- at -} FREESURF {- dot -} FR bas {- at -} FREESURF {- dot -} FR
Date: 2009-05-04

Next message:
Subject: Re: problem in transformation of pqe 30 clone
From: Raji Edayathumangalam raji {- at -} BRANDEIS {- dot -} EDU
Date: 2009-05-04