Re: [ccp4bb] refmac runs, but no output files

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

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Subject: Re: [cnsbb] RE: CNS problem: anneal.inp segmentation fault
From: William Scott wgscott {- at -} CHEMISTRY {- dot -} UCSC {- dot -} EDU
Date: 2007-05-23

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Subject: Re: Fw: Certificate of attendance for ccp4 study weekend 2007 - needed urgently
From: "Howard, ME (Maeri)" m {- dot -} e {- dot -} howard {- at -} DL {- dot -} AC {- dot -} UK
Date: 2007-05-23

Subject: Re: refmac runs, but no output files
From: Ronan Keegan r {- dot -} m {- dot -} keegan {- at -} DL {- dot -} AC {- dot -} UK
Date: 2007-05-23

Hi Jhon,

It might not be the source of the problem, but this error can occur if
you have closed the terminal window from where you started ccp4i while
still running ccp4i. i.e. if you back-grounded ccp4i when you started
it. Jobs such as Refmac invoke a "Movefile" command which sometimes
write information to the terminal. If the terminal window has been
closed this will cause the error that you see.

Hope this helps,

Ronan

Jhon Thomas wrote:
> Hi all
> I am using CCP4i, and running refmac for the
> refinement of the my data. I have ran this many times earlier
> successfully. Now as i run the refamc5 , it runs successfully and
> complete the job,but
> not writing any output file.
> At the end of the logfile, i get a satatement like this "CCP4I
> TERMINATION STATUS 0 Error from script
> /usr/progs/ccp4/ccp4-6.0/ccp4i/scripts/refmac5.script: error writing
> "stdout": I/O error"
>
>
>
> please, suggest me whatcould be the problem?
>
>
> Thanks in advance
>
> JT

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: [cnsbb] RE: CNS problem: anneal.inp segmentation fault
From: William Scott wgscott {- at -} CHEMISTRY {- dot -} UCSC {- dot -} EDU
Date: 2007-05-23