Re: [ccp4bb] Simultaneous PHENIX and CCP4 burp

- Protein crystallography

Main steps:

- Protein purification
- Crystallisation

Special:

- Programs for crystallography
- X-ray detectors

Basic tutorials:

   - Chemistry
   - Protein
   - Peptide
   - Amino Acids

Xtal community:

- CCP4BB

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: LBNL Scientific Engr Associate (PT/Weekends) # 20570 - Berkeley, CA
From: Amy Pagsolingan avpagsolingan {- at -} LBL {- dot -} GOV
Date: 2007-05-23

Next message:
Subject: can glucose covalently bond to the guanidino nitrogen of arginine?
From: Michael Colaneri colanerim {- at -} GMAIL {- dot -} COM
Date: 2007-05-23

Subject: Re: Simultaneous PHENIX and CCP4 burp
From: Tim Grune tim {- dot -} grune {- at -} SYNCHROTRON {- dot -} VIC {- dot -} GOV {- dot -} AU
Date: 2007-05-23

From how I understand Peter Zwart it is not a problem at all. You only need to
make sure that $CBIN come before the path where the phenix-version of phaser
resides, hence ccp4 calls the correct version by PATH and phenix calls the
correct version because it uses the absolute path.

Tim

On Thursday 24 May 2007 02:56, Frank von Delft wrote:
> Okay thanks, didn't know that.
>
> Mind you, that's how *I* solve the problem; suggestion though for next
> release: it probably shouldn't be a problem to begin with, since phenix
> too will be a major program package.
>
> Cheers
> phx
>
> > -----Original Message-----
> > From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On
> > Behalf Of Kevin Cowtan
> > Sent: 23 May 2007 15:56
> > To: CCP4BB@JISCMAIL.AC.UK
> > Subject: Re: [ccp4bb] Simultaneous PHENIX and CCP4 burp
> >
> > Setup your path to find the phenix version (i.e. phenix goes
> > first in your path).
> >
> > Then in CCP4i, go to System Administration/configure
> > interface and at the bottom of the External Programs folder
> > add the CCP4 paths for the conflicting applications
> > explicitly, i.e. add 'phaser' in the lefts hand box and
> > '/usr/local/ccp4-6.0.2/bin/phaser' (or whatever) in the right
> > hand box.
> >
> > Kevin
> >
> > Frank von Delft wrote:
> > > Hi, surprisingly I've not seen this question on either BB
> >
> > -- or else
> >
> > > nobody have both packages installed simultaneously (surely not????)
> > >
> > >
> > >
> > >
> > >
> > > Both ccp4 and phenix have a version of Phaser (v1.3.3 and
> >
> > v2 respectively).
> >
> > > Each is (?) incompatible with the other's GUI, yet in a
> >
> > simultaneous
> >
> > > install, only one can be on the PATH.
> > > a) Are the executables very different? (v1.3.3 and v2.0
> >
> > for ccp4 and
> >
> > > phaser respectively.) v2 has an older release date...
> > > b) How can one fix the path to make both executables
> >
> > available to the
> >
> > > shell?
> > > c) The same problem affects mmtbx and cctbx etc.
> > >
> > >
> > > Shouldn't the ccp4 versions maybe get different names?
> > >
> > > phx.

--
Tim Grune
Australian Synchrotron
800 Blackburn Road
Clayton, VIC 3168
Australia

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: LBNL Scientific Engr Associate (PT/Weekends) # 20570 - Berkeley, CA
From: Amy Pagsolingan avpagsolingan {- at -} LBL {- dot -} GOV
Date: 2007-05-23

Next message:
Subject: can glucose covalently bond to the guanidino nitrogen of arginine?
From: Michael Colaneri colanerim {- at -} GMAIL {- dot -} COM
Date: 2007-05-23