Re: [ccp4bb] problem starting refmac from ccp4i gui

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: problem starting refmac from ccp4i gui
From: Boaz Shaanan bshaanan {- at -} BGU {- dot -} AC {- dot -} IL
Date: 2009-05-16

Next message:
Subject: Re: problem starting refmac from ccp4i gui
From: Miguel Ortiz Lombardia miguel {- dot -} ortiz-lombardia {- at -} AFMB {- dot -} UNIV-MRS {- dot -} FR
Date: 2009-05-16

Subject: Re: problem starting refmac from ccp4i gui
From: Kay Diederichs kay {- dot -} diederichs {- at -} UNI-KONSTANZ {- dot -} DE
Date: 2009-05-16

Boaz,

I recently saw the same message, after installing (binary) 6.1.1 . The
workaround that seems to work for me is to start a new project from scratch.

The "STARTING" problem may have to do with the line
127.0.0.1 localhost.localdomain localhost
missing from /etc/hosts - did you check that?

HTH,

Kay

Boaz Shaanan schrieb:
> Hi,
>
> On a newly installed v 6.1.1 I (built from source) I can't get refmac to
> start from the gui (other programs, such as pointless and phaser, run
> fine). The latest patches have also been installed. When I start a
> refmac job that runs file under 6.1.0 (the binary built) the job gets
> stuck and the gui reports 'starting' for the job without switching to
> 'running'. The latest refmac version from York is installed (5.0.92) and
> again, it runs fine under 6.1.0.
>
> These lines appear in the window from which the ccp4i was launched after
> starting the job:
>
> can't set "ATOM(0)": variable isn't array
> while executing
> "set [subst $root]([subst $indx0]) """
> (procedure "ExecuteScript" line 50)
> invoked from within
> "ExecuteScript $system(SCRIPT)"
> ("script" arm line 8)
> invoked from within
> "switch $system(RUN_MODE)
> script {
>
> source [file join $env(CCP4I_TOP) src execute.tcl]
> source [file join $env(CCP4I_TOP) src job_utils..."
> (file "/home/boaz/ccp4/ccp4-6.1.1/ccp4i/bin/ccp4ish.tcl" line 145)
> invoked from within
> "source [file join $env(CCP4I_TOP) bin ccp4ish.tcl]"
> (file "/home/boaz/ccp4/ccp4-6.1.1/ccp4i/bin/ccp4ish" line 12)
>
>
> Does anybody have a clue on what could have gone wrong and how to fix
> the problem ?
>
> Thanks,
>
> Boaz
>
>
> Boaz Shaanan, Ph.D.
> Dept. of Life Sciences
> Ben-Gurion University of the Negev
> Beer-Sheva 84105
> Israel
> Phone: 972-8-647-2220 ; Fax: 646-1710
> Skype: boaz.shaanan
>
> â€Ž

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: problem starting refmac from ccp4i gui
From: Boaz Shaanan bshaanan {- at -} BGU {- dot -} AC {- dot -} IL
Date: 2009-05-16

Next message:
Subject: Re: problem starting refmac from ccp4i gui
From: Miguel Ortiz Lombardia miguel {- dot -} ortiz-lombardia {- at -} AFMB {- dot -} UNIV-MRS {- dot -} FR
Date: 2009-05-16