Re: [ccp4bb] Refmac5 error

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Refmac5 error
From: Jiamu Du jiamudu {- at -} GMAIL {- dot -} COM
Date: 2009-05-19

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Subject: FEBS Course Sofia 2009
From: Rudolf Ladenstein Rudolf {- dot -} Ladenstein {- at -} KI {- dot -} SE
Date: 2009-05-19

Subject: Re: Refmac5 error
From: "Keegan, RM (Ronan)" ronan {- dot -} keegan {- at -} STFC {- dot -} AC {- dot -} UK
Date: 2009-05-19

Dear Jiamu,

Please try installing the updated Refmac executable available from the
CCP4 website at:

http://www.ccp4.ac.uk/updates/#windows

This may eliminate the problem. If not let me know and I will look at
the issue in more detail.

Kind regards,

Ronan

Ronan Keegan

CCP4 Group

From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of
Jiamu Du
Sent: 19 May 2009 13:29
To: CCP4BB@JISCMAIL.AC.UK
Subject: [ccp4bb] Refmac5 error

Dear All,
I am using Refmac5 version 5.5.0066 of CCP4 6.1.0 on Windows XP system.
The program ran well initially but failed at the end and reported an
error as below:

Ncyc Rfact Rfree FOM -LL -LLfree rmsBOND zBOND
rmsANGL zANGL rmsCHIRAL $$
$$
0 0.2750 0.2799 0.793 109790. 5928.3 0.0155 0.646
1.731 0.763 0.116
1 0.2627 0.2986 0.772 109178. 6003.5 0.0253 1.054
2.050 0.932 0.151
$$

$TEXT:Warning: $$ comment $$
WARNING: CCPOPN Logical name
F:/structure/refine/garbage/w35/r2/DepositFiles/w35/unknown021207:20:46:
38.refmac has no associated file na
$$
Open failed: Unit: 9, File:
F:/structure/refine/garbage/w35/r2/DepositFiles/w35/unknown021207:20:46:
38.refmac (logical:
F:/structure/refine/garbage/w35/r2/DepositFiles/w35/unknown021207:20:46:
38.refmac)
Refmac_5.5.0066: Open failed: File:
F:/structure/refine/garbage/w35/r2/DepositFiles/w35/unknown021207:20:46:
38.refmac
Times: User: 0.0s System: 0.0s Elapsed: 1:04

************************************************************************
***
* Information from CCP4Interface script
************************************************************************
***
The program run with command: refmac5 XYZIN
"F:/structure/refine/garbage/w35/r2/3_molrep_refmac1.pdb" XYZOUT
"F:/tmp/35_1_2_pdb_1.tmp" HKLIN
"F:/structure/refine/garbage/w35/r2/output_22A_refmac2.mtz" HKLOUT
"F:/tmp/35_1_3_mtz_1.tmp" LIBOUT
"F:/structure/refine/garbage/w35/r2/35_1_lib.cif"
has failed with error message
Last system error message: Unknown error
Refmac_5.5.0066: Open failed: File:
F:/structure/refine/garbage/w35/r2/DepositFiles/w35/unknown021207:20:46:
38.refmac
************************************************************************
***

#CCP4I TERMINATION STATUS 0 Last system error message: Unknown error
Refmac_5.5.0066: Open failed: File:
F:/structure/refine/garbage/w35/r2/DepositFiles/w35/unknown021207:20:46:
38.refmac
#CCP4I TERMINATION TIME 19 May 2009 20:26:07
#CCP4I MESSAGE Task failed

The data and model are tested to be refined well on a Linux system. Is
there any suggestion?

Thanks and best wishes.

--
Jiamu Du, Ph.D.
State Key Laboratory of Molecular Biology
Institute of Biochemistry and Cell Biology
Shanghai Institutes for Biological Sciences
Chinese Academy of Sciences
320 Yue-Yang Road
Shanghai 200031
P. R. China
Tel: +86-21-5492-1117
E-mail: jiamudu@gmail.com

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Refmac5 error
From: Jiamu Du jiamudu {- at -} GMAIL {- dot -} COM
Date: 2009-05-19

Next message:
Subject: FEBS Course Sofia 2009
From: Rudolf Ladenstein Rudolf {- dot -} Ladenstein {- at -} KI {- dot -} SE
Date: 2009-05-19