Re: [ccp4bb] phaser

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: Offtopic: Alscript question
From: Charlie Bond Charles {- dot -} Bond {- at -} UWA {- dot -} EDU {- dot -} AU
Date: 2009-05-21

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Subject: Re: phasing with se-met at low resolution
From: Engin Ozkan eozkan {- at -} STANFORD {- dot -} EDU
Date: 2009-05-22

Subject: Re: phaser
From: Tim Gruene tg {- at -} SHELX {- dot -} UNI-AC {- dot -} GWDG {- dot -} DE
Date: 2009-05-22

Hello Aaron,

this usually means that you have a second version of phaser installed,
e.g. from the phenix package. To find out, go to a terminal from which you
would start ccp4i and type 'which phaser'. My guess is that the answer to
that command does not show phaser in the ccp4-directory.

To circumvent this problem you have to make sure that ccp4i 'sees' the
phaser from ccp4 first. There are several ways to do this.
1) if you never use phaser from the phenix distribution, simply rename it
to e.g. phaser-phenix or anything else.
2) make sure, the variable 'ccp4_first_in_path'is set to 1 in the ccp4
initialisation script AND make sure CCP4 is set up AFTER phenix
3) before starting ccp4i from a terminal, change the PATH variable
manually so that $CCP4/bin comes before the phenix path

Tim

--
Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen

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On Thu, 21 May 2009, Aaron Alt wrote:

> Dear all,
> When running phaser with ccp4i the program exits with a message
> saying that the program had a fatal runtime error and that it could
> not open the mtz file. All other programs I use with ccp4i manage to
> run without problems.
> Any ideas?
> Thank's for any input.
> Aaron
>

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: Offtopic: Alscript question
From: Charlie Bond Charles {- dot -} Bond {- at -} UWA {- dot -} EDU {- dot -} AU
Date: 2009-05-21

Next message:
Subject: Re: phasing with se-met at low resolution
From: Engin Ozkan eozkan {- at -} STANFORD {- dot -} EDU
Date: 2009-05-22