[ccp4bb] CCP4 / Ubuntu 9.04 64-bit

- Protein crystallography

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: can I try crystallization in high salt?
From: Djordje Francuski francuz {- at -} CHEMIE {- dot -} FU-BERLIN {- dot -} DE
Date: 2009-07-03

Next message:
Subject: Why NCS doesn't help?
From: Sun Tang suntang2222 {- at -} YAHOO {- dot -} COM
Date: 2009-07-03

Subject: CCP4 / Ubuntu 9.04 64-bit
From: Thomas J Magliery PhD magliery {- at -} CHEMISTRY {- dot -} OHIO-STATE {- dot -} EDU
Date: 2009-07-03

Hi, I just installed the 64-bit version of Ubuntu 9.04 Desktop, and then
I installed CCP4 6.1.1 using the standard package and installation
script. I can run ccp4i successfully. However, when I try to run Coot,
I get a bunch of errors. I think the problem is that Coot was compiled
with 32-bit libraries, which I don't have.

Is there some way to fix this without compiling Coot or re-installing
with 32-bit Ubuntu? Who knows how, but I have CCP4 (6.0.2) and Coot
(0.5-pre-1) working on my 64-bit FC8 laptop.

Thanks,
Tom

===
COOT_PREFIX is /usr/local/CCP4/Coot-0.5.2
/usr/local/CCP4/Coot-0.5.2/bin/coot-real
Acquiring application resources from
/usr/local/CCP4/Coot-0.5.2/share/coot/cootrc
Gtk-Message: Failed to load module "canberra-gtk-module":
/usr/lib/gtk-2.0/modules/libcanberra-gtk-module.so: wrong ELF class:
ELFCLASS64
INFO:: splash_screen_pixmap_dir
/usr/local/CCP4/Coot-0.5.2/share/coot/pixmaps
INFO:: Colours file: /usr/local/CCP4/Coot-0.5.2/share/coot/colours.def
loaded
INFO:: Using Standard CCP4 Refmac dictionary from CLIBD_MON:
/usr/local/CCP4/ccp4-6.1.1/lib/data/monomers/
There are 118 data in
/usr/local/CCP4/ccp4-6.1.1/lib/data/monomers//list/mon_lib_list.cif
There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/monomers//a/ALA.cif
There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/monomers//a/ASP.cif
There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/monomers//a/ASN.cif
There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/monomers//c/CYS.cif
There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/monomers//g/GLN.cif
There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/monomers//g/GLY.cif
There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/monomers//g/GLU.cif
There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/monomers//p/PHE.cif
There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/monomers//h/HIS.cif
There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/monomers//i/ILE.cif
There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/monomers//l/LYS.cif
There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/monomers//l/LEU.cif
There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/monomers//m/MET.cif
There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/monomers//m/MSE.cif
There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/monomers//p/PRO.cif
There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/monomers//a/ARG.cif
There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/monomers//s/SER.cif
There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/monomers//t/THR.cif
There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/monomers//v/VAL.cif
There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/monomers//t/TRP.cif
There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/monomers//t/TYR.cif
There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/monomers//p/PO4.cif
There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/monomers//s/SO4.cif
There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/monomers//g/GOL.cif
There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/monomers//e/ETH.cif
There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/monomers//c/CIT.cif
There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/monomers//a/AR.cif
There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/monomers//a/AD.cif
There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/monomers//c/CR.cif
There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/monomers//c/CD.cif
There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/monomers//g/GR.cif
There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/monomers//g/GD.cif
There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/monomers//t/TD.cif
There are 2 data in /usr/local/CCP4/ccp4-6.1.1/lib/data/monomers//u/UR.cif
Reading coordinate file:
/usr/local/CCP4/Coot-0.5.2/share/coot/standard-residues.pdb
PDB file /usr/local/CCP4/Coot-0.5.2/share/coot/standard-residues.pdb has
been read.
Spacegroup: P 1
Cell: 40.631 109.18 93.243 90 90 90
/usr/lib/gio/modules/libgioremote-volume-monitor.so: wrong ELF class:
ELFCLASS64
Failed to load module: /usr/lib/gio/modules/libgioremote-volume-monitor.so
/usr/lib/gio/modules/libgvfsdbus.so: wrong ELF class: ELFCLASS64
Failed to load module: /usr/lib/gio/modules/libgvfsdbus.so
/usr/lib/gio/modules/libgiogconf.so: wrong ELF class: ELFCLASS64
Failed to load module: /usr/lib/gio/modules/libgiogconf.so
initalize graphics molecules...done.
(filter-fileselection-filenames-state)
(get-active-map-drag-flag)
(use-graphics-interface-state)
ERROR: In procedure dynamic-link:
ERROR: file: "libguile-srfi-srfi-1-v-3", message:
"/usr/lib/libguile-srfi-srfi-1-v-3.so.3: wrong ELF class: ELFCLASS64"
Gtk-Message: Failed to load module "canberra-gtk-module":
/usr/lib/gtk-2.0/modules/libcanberra-gtk-module.so: wrong ELF class:
ELFCLASS64
coot-exe: "/usr/local/CCP4/Coot-0.5.2/bin/coot-real"
coot-version:
/usr/local/CCP4/Coot-0.5.2/bin/coot-real
core: #f
No core file found. No debugging
===

P.S. Hi Paul.

--
Thomas J. Magliery, Ph.D.
Assistant Professor
Department of Chemistry
& Department of Biochemistry
The Ohio State University
1043 Evans Laboratory
100 West 18th Ave.
Columbus, OH 43210-1185

(614) 247-8425 office
(614) 292-1685 fax
magliery@chemistry.ohio-state.edu
http://www.chemistry.ohio-state.edu/~magliery

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: can I try crystallization in high salt?
From: Djordje Francuski francuz {- at -} CHEMIE {- dot -} FU-BERLIN {- dot -} DE
Date: 2009-07-03

Next message:
Subject: Why NCS doesn't help?
From: Sun Tang suntang2222 {- at -} YAHOO {- dot -} COM
Date: 2009-07-03