Re: [ccp4bb] A babyish question on coot

- Protein crystallography

Main steps:

- Protein purification
- Crystallisation

Special:

- Programs for crystallography
- X-ray detectors

Basic tutorials:

   - Chemistry
   - Protein
   - Peptide
   - Amino Acids

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

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Subject: Re: A babyish question on coot
From: Josiah Obiero jmo012 {- at -} MAIL {- dot -} USASK {- dot -} CA
Date: 2007-05-28

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Subject: Re: A babyish question on coot
From: Nian Huang huangnian {- at -} GMAIL {- dot -} COM
Date: 2007-05-28

Optimize zone is also a good choice. Just drag it to the right
conformation. Hold Ctrl to drag only one atom. If you include a region
for real space refinement, there will be no clashes between amino
acids in the region.

Nian

On 5/28/07, Yanming Zhang wrote:
> Hi,
>
> I use coot almost around the clock. One thing troubles me is that:
> when clicking on 'real space refine zone', coot seems only care about the
> 'real space'(Electron density), sometimes it will bring the model to
> the density no matter whether the density was already claimed by other
> model atoms or not, resulting in clash and unreasonable geometry. How can
> I avoid this?
>
> Sorry for an old crystallographer to ask so babyish question. But your
> help can save me lots of time.
> Thanks
> Yanming
>

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: A babyish question on coot
From: Josiah Obiero jmo012 {- at -} MAIL {- dot -} USASK {- dot -} CA
Date: 2007-05-28

Next message:
Subject: Re: crystal shipping at room temperature
From: Juergen Bosch jbosch {- at -} U {- dot -} WASHINGTON {- dot -} EDU
Date: 2007-05-28