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Re: [ccp4bb] A babyish question on coot
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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999
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From: Julie Bouckaert bouckaej {- at -} VUB {- dot -} AC {- dot -} BE
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Subject: Re: A babyish question on coot
From: Anastassis Perrakis a {- dot -} perrakis {- at -} NKI {- dot -} NL
Date: 2007-05-29


Subject: Re: A babyish question on coot
From: "Debreczeni, Judit" Judit {- dot -} Debreczeni {- at -} ASTRAZENECA {- dot -} COM
Date: 2007-05-29

Unreasonable geometry can be avoided by setting the refinement weight to a lower value -- either using Extensions->Set Matrix (Refinement Weight) or in your .coot file:
(set-matrix )

There's also a coot-bb, btw.

JED






-----Original Message-----
From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK]On Behalf Of
Yanming Zhang
Sent: 29 May 2007 01:50
To: CCP4BB@JISCMAIL.AC.UK
Subject: [ccp4bb] A babyish question on coot


Hi,

I use coot almost around the clock. One thing troubles me is that:
when clicking on 'real space refine zone', coot seems only care about the
'real space'(Electron density), sometimes it will bring the model to
the density no matter whether the density was already claimed by other
model atoms or not, resulting in clash and unreasonable geometry. How can
I avoid this?

Sorry for an old crystallographer to ask so babyish question. But your
help can save me lots of time.
Thanks
Yanming
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