Re: [ccp4bb] Density modification

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: maprot question
From: Eleanor Dodson ccp4 {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2009-08-03

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Subject: Re: Phase matching program(s)
From: Eleanor Dodson ccp4 {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2009-08-03

Subject: Re: Density modification
From: Eleanor Dodson ccp4 {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2009-08-03

Can you send the command script?
Eleanor

kumar wrote:
> Dear CCP4¹ers, I¹m trying to run DM for after Refmac on an MR solution but
> it crashes. I do have the FOM¹s listed in my log file. I get a similar error
> when I use the mtz file from Phaser¹s SAD + MR. I¹d appreciate any help.
> Thanks! Kumar
>
> After Refmac ŠŠŠŠŠŠŠŠŠŠ..
>
> HISTLIB opened:
> Number of histograms = 18
> Number of entries per histogram = 100
> RESL 10.0 8.0 7.0 6.0 5.0 4.5 4.0 3.6 3.3 3.0 2.8 2.6 2.4 2.2
> 2.0 1.8 1.6 1.5
>
>
>

Initial Solvent Mask

> dm: (WFO) No density in map! Check input FOM present and nonzero
> Times: User: 0.2s System: 0.0s Elapsed: 0:01
>
>
> ***************************************************************************
> * Information from CCP4Interface script
> ***************************************************************************
> The program run with command: dm HKLIN
> "/home/elias/kumar/7_20/K15/reprocess/ccp4/cns/round2/round3/round4/round4_r
> efmac1.mtz" HKLOUT
> "/home/elias/kumar/7_20/K15/reprocess/ccp4/cns/round2/round3/round4/round4_d
> m2.mtz" SOLOUT
> "/home/elias/kumar/7_20/K15/reprocess/ccp4/cns/round2/round3/round4/round4_d
> m1.msk"
> has failed with error message
> dm: (WFO) No density in map! Check input FOM present and nonzero
> ***************************************************************************
>
>
> #CCP4I TERMINATION STATUS 0 " dm: (WFO) No density in map! Check input FOM
> present and nonzero"
>
> ***********************************************
> After Phaser (SAD+MR)ŠŠŠŠŠ..
>
>

Initial Solvent Mask

> dm: (WFO) No density in map! Check input FOM present and nonzero
> Times: User: 0.2s System: 0.0s Elapsed: 0:00
>
>
> ***************************************************************************
> * Information from CCP4Interface script
> ***************************************************************************
> The program run with command: dm HKLIN
> "/home/elias/kumar/7_20/K15/reprocess/ccp4/cns/round2/round3/round4/round4_9
> .mtz" HKLOUT
> "/home/elias/kumar/7_20/K15/reprocess/ccp4/cns/round2/round3/round4/round4_9
> _dm1.mtz" SOLOUT
> "/home/elias/kumar/7_20/K15/reprocess/ccp4/cns/round2/round3/round4/round4_9
> _dm1.msk"
> has failed with error message
> dm: (WFO) No density in map! Check input FOM present and nonzero
> ***************************************************************************
>
>
> #CCP4I TERMINATION STATUS 0 " dm: (WFO) No density in map! Check input FOM
> present and nonzero"
> ************************************
>
>
>
>
>

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: maprot question
From: Eleanor Dodson ccp4 {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2009-08-03

Next message:
Subject: Re: Phase matching program(s)
From: Eleanor Dodson ccp4 {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2009-08-03