Re: [ccp4bb] resolution shells for each bin in scala?

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: detergent crystals
From: Jacob Keller j-keller2 {- at -} MD {- dot -} NORTHWESTERN {- dot -} EDU
Date: 2009-08-04

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Subject: Re: detergent crystals
From: "Van Den Berg, Bert" Lambertus {- dot -} VandenBerg {- at -} UMASSMED {- dot -} EDU
Date: 2009-08-04

Subject: Re: resolution shells for each bin in scala?
From: Francis E Reyes Francis {- dot -} Reyes {- at -} COLORADO {- dot -} EDU
Date: 2009-08-04

I was hoping for a break down for each bin similar to that of d*trek..

for example:

Rmerge vs Resolution
--------------------------------------------------------------------------------
Resolution Average Num Num I/sig I/sig Rducd Model
Rmerge Rmerge
range counts rejs mults unavg avg ChiSq Eadd*
shell cumul
--------------------------------------------------------------------------------
45.96 - 5.45 810 211 1597 10.5 19.9 0.85 0.06
0.043 0.043
5.45 - 4.33 565 40 1640 6.9 12.6 0.84 0.10
0.074 0.056
4.33 - 3.78 387 34 1633 4.6 8.5 0.91 0.15
0.114 0.069
3.78 - 3.43 245 37 1679 3.3 6.1 0.93 0.22
0.172 0.081
3.43 - 3.19 166 38 1676 2.7 4.8 1.04 0.28
0.239 0.093
3.19 - 3.00 126 31 1675 2.3 4.1 1.05 0.34
0.288 0.104
3.00 - 2.85 110 13 1664 2.1 3.6 1.11 0.39
0.325 0.114
2.85 - 2.73 101 3 1259 2.0 3.0 1.03 0.42
0.313 0.119
2.73 - 2.62 99 2 870 2.0 2.7 1.02 0.41
0.308 0.121
2.62 - 2.53 97 0 512 1.9 2.4 0.84 0.42
0.287 0.122
--------------------------------------------------------------------------------
45.96 - 2.53 304 409 14205 4.2 7.6 0.96 0.16
0.122 0.122

The last resolution bin has a slice of 2.62 and 2.53 data. I would
like those for every resolution listed.

FR

On Aug 4, 2009, at 3:25 AM, Phil Evans wrote:

> The table has 1/d^2 and Dmin for the outer edge of each bin (columns
> 2 & 3)
>
> Phil
>
> By 4SINTH/LASQ bins (all statistics relative to Mn(I))
> ______________________________________________________________
>
>
> codebase="/usr/local/CCP4versions/Clapham/ccp4-6.1.1/bin">
> name="table" value="
> $TABLE: Analysis against resolution , New :
> $GRAPHS: I/sigma, Mean Mn(I)/sd(Mn(I)):N:2,11,13:
> : Rmerge v Resolution:N:2,4,5,7:
> : Average I,sd and Sigma :A:2,9,10,12: : Fractional bias :A:2,17: $$
> N 1/resol^2 Dmin(A) Rmrg Rfull Rcum Ranom Nanom Av_I SIGMA
> I/sigma sd Mn(I/sd) Nmeas Nref Ncent FRCBIAS Nbias $$
>
>
> N 1/d^2 Dmin(A) Rmrg Rfull Rcum Ranom Nanom Av_I SIGMA I/
> sigma sd Mn(I/sd) Nmeas Nref Ncent FRCBIAS Nbias
> $$
> 1 0.0248 6.36 0.049 - 0.049 - 0 171815 17806
> 9.6 42009 7.3 3085 844 81 -0.059 899
> 2 0.0495 4.49 0.068 - 0.058 - 0 92604 11948
> 7.8 22958 7.1 5715 1508 84 -0.044 1765
> 3 0.0743 3.67 0.113 - 0.080 - 0 136756 35595
> 3.8 33538 6.9 5188 1446 55 -0.062 1499
> 4 0.0990 3.18 0.161 - 0.099 - 0 80572 34834
> 2.3 21356 5.9 6512 1832 57 -0.103 1898
> 5 0.1238 2.84 0.129 - 0.102 - 0 35017 7334
> 4.8 9786 5.5 8897 2484 81 -0.038 2663
> 6 0.1485 2.59 0.192 - 0.107 - 0 17780 5282
> 3.4 6082 4.2 7234 2069 57 0.002 2061
> 7 0.1733 2.40 0.268 - 0.112 - 0 11018 4436
> 2.5 5042 3.4 8308 2383 49 -0.033 2364
> 8 0.1980 2.25 0.509 - 0.118 - 0 6611 5348
> 1.2 5286 2.2 6637 1922 21 -0.016 1873
> 9 0.2228 2.12 0.773 - 0.131 - 0 9030 33528
> 0.3 7036 1.6 6683 1941 6 -0.169 1906
> 10 0.2475 2.01 1.043 - 0.142 - 0 4970 10229
> 0.5 6723 1.4 7108 2081 10 -0.201 2084
> $$
> ">For inline graphs use a Java browser
>
> Overall: 0.142 - 0.142 - 0 45355 19774
> 2.3 13412 4.1 65367 18510 501 -0.062 19012
> Rmrg Rfull Rcum Ranom Nanom Av_I SIGMA I/
> sigma sd Mn(I/sd) Nmeas Nref Ncent FRCBIAS Nbias
>
>
>
>
> On 4 Aug 2009, at 09:47, Eleanor Dodson wrote:
>
>> Cant you read the shell limits off the loggraphs? The numbers in
>> the tables are given as 4sin**2/Lamba**2 I think but that is
>> converted to As in the loggraph.
>> Is that what you mean though?
>> Eleanor
>>
>> Francis E Reyes wrote:
>>> Hello ccp4'ers
>>>
>>>
>>> Where is / how can I obtain the resolution shell for each
>>> resolution bin in scala? My eyes can't seem to find it.
>>>
>>>
>>> Thanks
>>>
>>>
>>> FR
>>>
>>> ---------------------------------------------
>>> Francis Reyes M.Sc.
>>> 215 UCB
>>> University of Colorado at Boulder
>>>
>>> gpg --keyserver pgp.mit.edu --recv-keys 67BA8D5D
>>>
>>> 8AE2 F2F4 90F7 9640 28BC 686F 78FD 6669 67BA 8D5D
>>>
>>>

---------------------------------------------
Francis Reyes M.Sc.
215 UCB
University of Colorado at Boulder

gpg --keyserver pgp.mit.edu --recv-keys 67BA8D5D

8AE2 F2F4 90F7 9640 28BC 686F 78FD 6669 67BA 8D5D

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: detergent crystals
From: Jacob Keller j-keller2 {- at -} MD {- dot -} NORTHWESTERN {- dot -} EDU
Date: 2009-08-04

Next message:
Subject: Re: detergent crystals
From: "Van Den Berg, Bert" Lambertus {- dot -} VandenBerg {- at -} UMASSMED {- dot -} EDU
Date: 2009-08-04