[ccp4bb] refmac5 error message

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: Zinc or Iron binding protein, that is a question!
From: Guenter Fritz guenter {- dot -} fritz {- at -} UNI-KONSTANZ {- dot -} DE
Date: 2009-08-06

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Subject: Re: refmac5 error message
From: Ezra Peisach epeisach {- at -} GMAIL {- dot -} COM
Date: 2009-08-06

Subject: refmac5 error message
From: Vesna Serrano vsserran {- at -} NCSU {- dot -} EDU
Date: 2009-08-06

Dear all,
I am using Refmac_5.5.0088 in CCP4 6.1.0, linux version. The program runs
well normally, but all of a sudden it failed with the following message:
Refmac_5.5.0088: Open failed: File: /tmp/vesna/refmac5_temp1.06489.txt.
Here is the log file of the run:

#CCP4I VERSION CCP4Interface 2.0.4
#CCP4I SCRIPT LOG refmac5
#CCP4I DATE 05 Aug 2009 02:04:38
#CCP4I USER vesna
#CCP4I PROJECT wtDHPAB
#CCP4I JOB_ID 19
#CCP4I SCRATCH /tmp/vesna
#CCP4I HOSTNAME localhost.localdomain
#CCP4I PID 6486



 ###############################################################
 ###############################################################
 ###############################################################
 ### CCP4 6.1: Refmac_5.5.0088     version 5.5.0088 : 08/12/08##
 ###############################################################
 User: unknown  Run date:  5/ 8/2009 Run time: 02:04:38


 Please reference: Collaborative Computational Project, Number 4. 1994.
 "The CCP4 Suite: Programs for Protein Crystallography". Acta Cryst. D50,
760-763.
 as well as any specific reference in the program write-up.

 $TEXT:Reference1: $$ comment $$
   "Refinement of Macromolecular Structures by the  Maximum-Likelihood
Method:"
   G.N. Murshudov, A.A.Vagin and E.J.Dodson,(1997)
   Acta Crystallogr. D53, 240-255
   EU  Validation contract: BIO2CT-92-0524

 $$
 $SUMMARY :Reference1:  $$ Refmac: $$
 :TEXT:Reference1: $$

 Open failed: Unit:   7, File: /tmp/vesna/refmac5_temp1.06489.txt
(logical: /tmp/vesna/refmac5_temp1.06489.txt)
 Refmac_5.5.0088:   Open failed: File: /tmp/vesna/refmac5_temp1.06489.txt
Times: User:       0.0s System:    0.0s Elapsed:     0:00

***************************************************************************
* Information from CCP4Interface script
***************************************************************************
The program run with command: /usr/local/xtal/ccp4-6.1.1/bin/refmac5 XYZIN
"/home/vesna/wtDHPAB/ABwt4ID50-adj1.pdb" XYZOUT
"/home/vesna/wtDHPAB/wtDHPAB_19_2_pdb_1.tmp" HKLIN
"/home/vesna/wtDHPAB/full_ABwtID4.mtz" HKLOUT
"/home/vesna/wtDHPAB/wtDHPAB_19_3_mtz_1.tmp" LIBOUT
"/home/vesna/wtDHPAB/wtDHPAB_19_lib.cif"
has failed with error message
Last system error message: Permission denied
Refmac_5.5.0088: Refmac_5.5.0088
***************************************************************************

#CCP4I TERMINATION STATUS 0 Last system error message: Permission denied
Refmac_5.5.0088: Open failed: File: /tmp/vesna/refmac5_temp1.06489.txt
#CCP4I TERMINATION TIME 05 Aug 2009 02:04:38
#CCP4I MESSAGE Task failed

I would very much appreciate help in solving this problem.

Regards,

Vesna Serrano

Dept. of Chemistry
NC State Univ.
Raleigh, NC 27695

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: Zinc or Iron binding protein, that is a question!
From: Guenter Fritz guenter {- dot -} fritz {- at -} UNI-KONSTANZ {- dot -} DE
Date: 2009-08-06

Next message:
Subject: Re: refmac5 error message
From: Ezra Peisach epeisach {- at -} GMAIL {- dot -} COM
Date: 2009-08-06