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Re: [ccp4bb] how to generate the figure of buried surface area
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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999
Previous message:
Subject: Re: cryoEM maps out of scale for docking experiments
From: Christoph Best best {- at -} EBI {- dot -} AC {- dot -} UK
Date: 2009-08-08		Next message:
Subject: pseudo-translational symmetry
From: "Romano, Keith" Keith {- dot -} Romano {- at -} UMASSMED {- dot -} EDU
Date: 2009-08-08


Subject: Re: how to generate the figure of buried surface area
From: Warren DeLano warren {- at -} DELSCI {- dot -} COM
Date: 2009-08-08

Jiamu,

That is a question for pymol-users, not ccp4bb:

http://sourceforge.net/mail/?group_id=4546

Cheers,
Warren

PS. here's one answer:


# create the objects

load $TUT/1hpv.pdb

create side1, chain A

create side2, chain B

dele 1hpv


# splay apart the interface

show surface, side1 within 5 of side2

show surface, side2 within 5 of side1

orient side1 side2


translate [-30, 0, 0], side1

translate [30, 0, 0], side2

rotate y, -60, side1, origin=side1

rotate y, 60, side2, origin=side2

zoom


-----Original Message-----
From: CCP4 bulletin board on behalf of Jiamu Du
Sent: Fri 8/7/2009 7:09 PM
To: CCP4BB@JISCMAIL.AC.UK
Subject: [ccp4bb] how to generate the figure of buried surface area

Dear all,
I am analyzing a complex structure and generate figure using the program
Pymol. Here I want to generate a figure to show the buried surface area. How
to generate this type figrues?
Thanks and best wishes.

--
Jiamu Du, Ph.D.
State Key Laboratory of Molecular Biology
Institute of Biochemistry and Cell Biology
Shanghai Institutes for Biological Sciences
Chinese Academy of Sciences
320 Yue-Yang Road
Shanghai 200031
P. R. China
Tel: +86-21-5492-1117
E-mail: jiamudu@gmail.com

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999
Previous message:
Subject: Re: cryoEM maps out of scale for docking experiments
From: Christoph Best best {- at -} EBI {- dot -} AC {- dot -} UK
Date: 2009-08-08		Next message:
Subject: pseudo-translational symmetry
From: "Romano, Keith" Keith {- dot -} Romano {- at -} UMASSMED {- dot -} EDU
Date: 2009-08-08
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