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Re: [ccp4bb] How to model apo protein structure from solved ligand bound high resolution structure?
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Subject: Re: How to model apo protein structure from solved ligand bound high resolution structure?
From: AntonioLeung leunglm {- at -} HOTMAIL {- dot -} COM
Date: 2009-08-09		Next message:
Subject:
From: Guenter Fritz guenter {- dot -} fritz {- at -} UNI-KONSTANZ {- dot -} DE
Date: 2009-08-10


Subject: Re: How to model apo protein structure from solved ligand bound high resolution structure?
From: wu donghui wdh0972 {- at -} GMAIL {- dot -} COM
Date: 2009-08-09

More information about the two ligand bound structures, each protein is
composed of two globular domains, between the two globular domains, there
lies a deep cleft and ligand sits or buried there comfortably. These two
domains are connected by a hinge region, here we want to model how this
hinge region moves upon ligand binding. Any recommendation for any program
which can do this task well. Thanks ahead.

Donghui

On Sun, Aug 9, 2009 at 8:37 PM, wu donghui wrote:

> Dear CCP4ers,
> Recently we have solved two structures from E.coli in high resolution,
> which have bound two different ligands tightly already. Here I want to know
> if there is any program which can let us model the structure of our apo
> proteins confidently. Thanks ahead for any comment and input.
>
> Regards,
>
> Donghui
>
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