Re: [ccp4bb] [PyMOL] Extracting Amino Acid Sequence from PDB File

- Protein crystallography

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: Extracting Amino Acid Sequence from PDB File
From: "S {- dot -} Jack Lin" sjacklin {- at -} GMAIL {- dot -} COM
Date: 2009-08-13

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Subject: CC beamtime application deadline this saturday
From: Banumathi Sankaran BSankaran {- at -} LBL {- dot -} GOV
Date: 2009-08-13

Subject: Re: [PyMOL] Extracting Amino Acid Sequence from PDB File
From: Warren DeLano warren {- at -} DELSCI {- dot -} COM
Date: 2009-08-13

Buz,

# Yep, PyMOL 1.2:

load $TUT/1hpv.pdb

save 1hpv.fasta

# or by selection

save 1hpv_A.fasta, chain A

# etc.

Cheers
Warren

> -----Original Message-----
> From: Buz Barstow [mailto:buzb@mac.com]
> Sent: Thursday, August 13, 2009 2:39 PM
> To: pymol-users@lists.sourceforge.net; CCP4BB@JISCMAIL.AC.UK
> Subject: [PyMOL] Extracting Amino Acid Sequence from PDB File
>
> Hi All,
>
> Does anyone know of a program that can extract the amino sequence of a
> protein from a PDB file and output it as a FASTA file?
>
> Thanks! and all the best,
>
> --Buz
>
>
>
>
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CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: Extracting Amino Acid Sequence from PDB File
From: "S {- dot -} Jack Lin" sjacklin {- at -} GMAIL {- dot -} COM
Date: 2009-08-13

Next message:
Subject: CC beamtime application deadline this saturday
From: Banumathi Sankaran BSankaran {- at -} LBL {- dot -} GOV
Date: 2009-08-13