Re: [ccp4bb] scala maxbat compile problems

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: problems with molprobity in coot
From: Thomas Cleveland thomas {- dot -} cleveland {- at -} GMAIL {- dot -} COM
Date: 2009-10-12

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Subject: Re: problems with molprobity in coot
From: Paul Emsley paul {- dot -} emsley {- at -} BIOCH {- dot -} OX {- dot -} AC {- dot -} UK
Date: 2009-10-12

Subject: Re: scala maxbat compile problems
From: jp d yoyoq {- at -} YAHOO {- dot -} COM
Date: 2009-10-12

hi,
thanks
replying to another question the gfortran version is:
4:4.2.3-1ubuntu6
i modified maxbat in scala_/parameter.fh
./configure and make

however, modifying the configure file to include
-mcmodel=medium
does indeed fix the problem

thanks very much
jpd

--- On Sun, 10/11/09, Kay Diederichs wrote:

> From: Kay Diederichs
> Subject: Re: [ccp4bb] scala maxbat compile problems
> To: CCP4BB@JISCMAIL.AC.UK
> Date: Sunday, October 11, 2009, 2:20 AM
> jpd,
>
> I have seen this type of error message in situations where
> some memory limit was exceeded.
>
> Based on googling with 'common "relocation truncated to
> fit" ', the memory limit has something to do with a COMMON
> block exceeding its max size, see -
> http://coding.derkeiler.com/Archive/Fortran/comp.lang.fortran/2008-10/msg00471.html
>
> Other than that posting suggests, it is the ifort compiler
> which understands -mcmodel=medium ; how the same is done
> with gfortran I don't know.
>
> Furthermore, more googling reveals that -mcmodel=medium
> also seems to require -i-dynamic (as an option to ifort).
>
> So I think you should try ifort compilation whith those
> options - but it might mean that also some of the libraries
> have to be recompiled.
>
> HTH,
>
> Kay
>
> jp d schrieb:
> > hi
> > more information.
> > scala compiles with maxbat set anywto 11750,
> > but fails with maxbat 11760
> >
> > jpd
> >
> > --- On Fri, 10/9/09, jp d
> wrote:
> >
> >> From: jp d
> >> Subject: [ccp4bb] scala maxbat compile problems
> >> To: CCP4BB@JISCMAIL.AC.UK
> >> Date: Friday, October 9, 2009, 3:16 PM
> >> hi,
> >> we were hitting maxbat limits so i downloaded the
> source
> >> and increased maxbat whereever i found it to
> 20000
> >> compiling fails at scala with errors like this:
> >>
> >> scala.f:(.text+0x5e0): relocation truncated to
> fit:
> >> R_X86_64_32S against symbol `rfile_' defined in
> COMMON
> >> section in scala.o
> >> scala.f:(.text+0x601): relocation truncated to
> fit:
> >> R_X86_64_32S against symbol `rfile_' defined in
> COMMON
> >> section in scala.o
> >>
> >> Ubuntu 8 , 64 bit , ccp4-6.1.2
> >>
> >> is there some configure option i am missing?
> >>
> >> thanks
> >> jpd
> >>
>
>
> -- Kay Diederichs
> http://strucbio.biologie.uni-konstanz.de
> email: Kay.Diederichs@uni-konstanz.de
> Tel +49 7531 88 4049 Fax 3183
> Fachbereich Biologie, Universitaet Konstanz, Box M647,
> D-78457 Konstanz
>

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: problems with molprobity in coot
From: Thomas Cleveland thomas {- dot -} cleveland {- at -} GMAIL {- dot -} COM
Date: 2009-10-12

Next message:
Subject: Re: problems with molprobity in coot
From: Paul Emsley paul {- dot -} emsley {- at -} BIOCH {- dot -} OX {- dot -} AC {- dot -} UK
Date: 2009-10-12