Re: [ccp4bb] problems with phaser for MR

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: microscope
From: Roger Rowlett RRowlett {- at -} MAIL {- dot -} COLGATE {- dot -} EDU
Date: 2007-06-11

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Date: 2007-06-11

Subject: Re: problems with phaser for MR
From: "Randy J {- dot -} Read" rjr27 {- at -} CAM {- dot -} AC {- dot -} UK
Date: 2007-06-11

Yes, this is an inconsistency between the version of the Phaser executable
and the version of ccp4i. To get around the problem that filenames,
particularly in Windows, can have spaces in them, the ccp4i GUI now wraps
filenames with quotation marks. But this required a corresponding change in
the Phaser parser. You're running the version of ccp4i that puts in
quotation marks with the older version of Phaser (probably from Phenix)
that doesn't know about them.

To avoid this confusion in the future, Ralf Grosse-Kunstleve has changed
things so that the version of Phaser in Phenix is called phenix.phaser.
From the next release of Phenix on, there won't be a confusion between
installations. In the meantime, our FAQ page has instructions on how to
configure ccp4i so that it finds the executable that you want.

Randy Read

On Jun 10 2007, Ed Wright wrote:

>Dear All,
>I can't seem to read my mtz files with 'PHASER for MR' in version
>ccp4i 6.0.2 running on either a linux or irix system. I can read the mtz
>files with virtually every other CCP4 subroutine. Any ideas/suggestions?
>
>The error I get in the log file is "
>
>
> ****************************************************************************
> *********
>
>*** Phaser Module: READ MR DATA FROM MTZ FILE
>1.3.1 ***
>
>
> ****************************************************************************
> ********* ----------------------------------------------------
>
>FATAL RUNTIME ERROR: Cannot open MTZ file:
>
>"/home/elias/mergedata/p4/ccp4/sort_p4.mtz"
>
>----------------------------------------------------
>--------------------
>
>EXIT STATUS: FAILURE
>

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: microscope
From: Roger Rowlett RRowlett {- at -} MAIL {- dot -} COLGATE {- dot -} EDU
Date: 2007-06-11

Next message:
Subject: major modeling softwares
From: "Y {- dot -} -F {- dot -} Li" yongfuli {- at -} GMAIL {- dot -} COM
Date: 2007-06-11