Re: [ccp4bb] loop modelling?

- Protein crystallography

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: loop modelling?
From: Tommi Kajander tommi {- dot -} kajander {- at -} HELSINKI {- dot -} FI
Date: 2009-11-01

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Subject: Re: loop modelling?
From: Mensur Dlakic mdlakic {- at -} MONTANA {- dot -} EDU
Date: 2009-11-01

Subject: Re: loop modelling?
From: Vellieux Frederic Frederic {- dot -} Vellieux {- at -} IBS {- dot -} FR
Date: 2009-11-01

I can suggest 2 things:

look for the work by Janet Thornton et alteri, they have analysed loops
(and classified them) in protein structures so that they might have
loop modelling tools;

also Gert Vriend's program WHATIF might have something along those
lines... I think the program still exists (it is gigantic) and has been
ported to recent Unices.

Fred.

Tommi Kajander wrote:
> Dear all
> I was wondering if anyone knows a simple way to generate a missing
> loop (strech of amino acids)
> really in just some simple manner (no fancy minization necessary, of
> course some constraints probably dont
> hurt), just for visualization purposes of further simulations etc....
>
> thanks!
> tommi
>
>

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: loop modelling?
From: Tommi Kajander tommi {- dot -} kajander {- at -} HELSINKI {- dot -} FI
Date: 2009-11-01

Next message:
Subject: Re: loop modelling?
From: Mensur Dlakic mdlakic {- at -} MONTANA {- dot -} EDU
Date: 2009-11-01