Re: [ccp4bb] experience with the new coot 0.5.2 and a couple of questions

- Protein crystallography

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: Unit of electrostatic potential in PyMol
From: Warren DeLano warren {- at -} DELSCI {- dot -} COM
Date: 2009-11-02

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Subject: Re: experience with the new coot 0.5.2 and a couple of questions
From: Kevin Cowtan cowtan {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2009-11-03

Subject: Re: experience with the new coot 0.5.2 and a couple of questions
From: Paul Emsley paul {- dot -} emsley {- at -} BIOCH {- dot -} OX {- dot -} AC {- dot -} UK
Date: 2009-11-03

lei feng wrote:
>
>
> comparing with the old version ( I used CCP4 6.0.2 on my windows xp
> computer and finished my Ph.D projects.), I found the new version of
> coot is kind of slow in moving to the next residue of the structure by
> hitting the space. Can we adjust this to make it faster?

Yes.

Edit -> Preferences -> Smooth Recentering -> Number of Steps -> 10

Also:

http://www.biop.ox.ac.uk/coot/doc/coot/Slow-Computer-Configuration.html#Slow-Computer-Configuration

>
>
> also the automatic stepped refinement is amazing, I really like it. Is
> there anyway to pause it in the middle?

Not in 0.5.x

> ( I guess this is the same scenario for the other automatic refinement
> in the extensions -- post MR refinement methods ).

In 0.6-pre there is.

> my personal experience is , if I touch any button, it will freeze and
> the coot window become grey- invisible , but from the scripts window,
> I can see it is still running.

Yes, me too.

> It will remain this until the job is done. then I can see the
> structures again. This also happen if my PC comes up with screen
> saver , the coot window will not be visible again even the PC is out
> of screen saver mode.

Not seen that...

>
> can we use the new version of the coot to break and build bonds?

No, not in the sense that I think you mean it, anyway.

HTH,

Paul.

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: Unit of electrostatic potential in PyMol
From: Warren DeLano warren {- at -} DELSCI {- dot -} COM
Date: 2009-11-02

Next message:
Subject: Re: experience with the new coot 0.5.2 and a couple of questions
From: Kevin Cowtan cowtan {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2009-11-03