Re: [ccp4bb] AMP link

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: Arp/wArp error
From: Clemens Vonrhein vonrhein {- at -} GLOBALPHASING {- dot -} COM
Date: 2009-12-01

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Subject: Refining residues as rigid bodies
From: Jason Porta jporta {- at -} UNMC {- dot -} EDU
Date: 2009-12-01

Subject: Re: AMP link
From: Paul Emsley paul {- dot -} emsley {- at -} BIOCH {- dot -} OX {- dot -} AC {- dot -} UK
Date: 2009-12-01

Vandana Kukshal wrote:
>
>
>
> i want to link AMP covalently with lysine in my structure
> (phosphoamide bond)how i will do this in coot and refmac .
> in turbo there is option make bond but in this no option is there .

The issue here is there there is no dictionary definition of the bond
between AMP and LYS. Have a look at the Refmac dictionary
list/mon_lib_list.cif and compose your own link along the lines of those
in the data_link_list.

Paul.

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: Arp/wArp error
From: Clemens Vonrhein vonrhein {- at -} GLOBALPHASING {- dot -} COM
Date: 2009-12-01

Next message:
Subject: Refining residues as rigid bodies
From: Jason Porta jporta {- at -} UNMC {- dot -} EDU
Date: 2009-12-01