Re: [ccp4bb] How to add a single water molecule

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: How to add a single water molecule
From: Frederic VELLIEUX frederic {- dot -} vellieux {- at -} ORANGE {- dot -} FR
Date: 2009-12-03

Next message:
Subject: Re: How to add a single water molecule
From: Paul Emsley paul {- dot -} emsley {- at -} BIOCH {- dot -} OX {- dot -} AC {- dot -} UK
Date: 2009-12-03

Subject: Re: How to add a single water molecule
From: rui ruisher {- at -} GMAIL {- dot -} COM
Date: 2009-12-03

Thank you all for the quick reply. Kim and Ingrid both pointed me to the
same direction!! Thanks a bunch :-)

On Thu, Dec 3, 2009 at 2:37 PM, Frederic VELLIEUX <
frederic.vellieux@orange.fr> wrote:

> Hi Rui,
>
> I am at home so this is all from memory. In coot.
>
> Use the control key (pressed down) to translate the map and get the center
> point on top of your positive density (using the mouse at the same time,
> left button I think). Do not hold cntrl any more to rotate the map by 90
> degrees. Cntrl again to move the map etc etc until the center point is right
> in the middle of the density.
>
> Then you use the menu, add atom, select Water, make sure you insert into
> your current molecule. One water atom added, done.
>
> Repeat the process until you're finished adding waters. Then save as
> usual...
>
> HTH,
>
> Fred.
>
> > Message du 03/12/09 19:59
> > De : "rui"
> > A : CCP4BB@JISCMAIL.AC.UK
> > Copie à :
> > Objet : [ccp4bb] How to add a single water molecule
> >
> > Hi, All,
> >
> > I tried to use phenix to add water molecules, and when I check those
> waters
> > in coot, I can easily delete them if they are not in right spot. However,
> if
> > I see some clear positive maps that seems like water, can I add manually
> at
> > that position? How to do this in coot?Or any other way?
> >
>

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: How to add a single water molecule
From: Frederic VELLIEUX frederic {- dot -} vellieux {- at -} ORANGE {- dot -} FR
Date: 2009-12-03

Next message:
Subject: Re: How to add a single water molecule
From: Paul Emsley paul {- dot -} emsley {- at -} BIOCH {- dot -} OX {- dot -} AC {- dot -} UK
Date: 2009-12-03