Quick navigation: Home   |    Site Map   ||    References   |    Biography   ||    Copyright   |    Other copyright   |    Contact us   |    Advert   |   
 

Re: [ccp4bb] conversion of .fcf to 2fo-fc.map and fo-fc.map of ccp4 format

- Protein crystallography

Main steps:

   - Protein purification
   - Crystallisation

Special:

   - Programs for crystallography
   - X-ray detectors

Basic tutorials:

   - Chemistry
   - Protein
   - Peptide
   - Amino Acids

Xtal community:

   - CCP4BB

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999
Previous message:
Subject: Post-Doctoral Position, CrystaX
From: "Ingo P {- dot -} Korndoerfer" ipk {- at -} CRYSTAX {- dot -} COM
Date: 2007-06-18
Next message:
Subject: Re: Low resolution chain tracing
From: "Fan, Hai-fu" fanhf {- at -} CRYST {- dot -} IPHY {- dot -} AC {- dot -} CN
Date: 2007-06-18


Subject: Re: conversion of .fcf to 2fo-fc.map and fo-fc.map of ccp4 format
From: deliang chen deliangc {- at -} UCI {- dot -} EDU
Date: 2007-06-18

Thanks George,

So I wonder whether I can choose to generate different maps to look during
refinement in COOT? In MIFit program, it is very easy to do this, but I just
don't like the interface of MIFit, still loving COOT so much.

deliang


----- Original Message -----
From: "George M. Sheldrick"
To:
Sent: Friday, June 15, 2007 1:58 PM
Subject: [ccp4bb] conversion of .fcf to 2fo-fc.map and fo-fc.map of ccp4
format


>I understand that when Coot reads the .fcf file it makes SigmaA weighted
> maps, i.e. 2mFo-DFc and mFo-DFc. These are the maps you should usually be
> looking at during the refinement.
>
> George
>
> Prof. George M. Sheldrick FRS
> Dept. Structural Chemistry,
> University of Goettingen,
> Tammannstr. 4,
> D37077 Goettingen, Germany
> Tel. +49-551-39-3021 or -3068
> Fax. +49-551-39-2582
>
>
> On Fri, 15 Jun 2007, deliang chen wrote:
>
>> Thanks George,
>>
>> Yes, COOT can open fcf.file and make beautiful maps. But I don't know
>> whether
>> COOT can generate different Fourier type maps like 2Fo-Fc, mFo-DFc, etc
>> according to the fcf and pdb files I input. It seems to me COOT only
>> generate
>> Fo and Fo-Fc maps when the fcf file is loaded. Is this correct?
>>
>> many thanks.
>>
>> Deliang
>>
>




ProteinCrystallography.org: Copyright 2006-2010 by Quid United Ltd