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Re: [ccp4bb] Wanted: Structure with Lots of Model Bias
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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999
Previous message:
Subject: Wanted: Structure with Lots of Model Bias
From: himmel himmel {- at -} CABM {- dot -} RUTGERS {- dot -} EDU
Date: 2010-01-07		Next message:
Subject: Reg. Protein purification
From: Sivaraman Padavattan s {- dot -} padavattan {- at -} GMAIL {- dot -} COM
Date: 2010-01-08


Subject: Re: Wanted: Structure with Lots of Model Bias
From: Pavel Afonine PAfonine {- at -} LBL {- dot -} GOV
Date: 2010-01-07

Hi Daniel,

you can find an example here:

Acta Cryst. (2008). D64, 515-524
Iterative-build OMIT maps: map improvement by iterative model building
and refinement without model bias.
T. C. Terwilliger, R. W. Grosse-Kunstleve, P. V. Afonine, N. W.
Moriarty, P. D. Adams, R. J. Read, P. H. Zwart and L.-W. Hung

Pavel.


On 1/7/10 7:35 AM, himmel wrote:
> Dear All,
> Happy new year!
>
> I would like to do a test of how some software detects and
> removes model bias from an electron density map.
>
> To that end, I am looking for a data set and unrefined
> (or partially refined) structure that exhibits very obvious
> model bias in the electron density. I would also need the fully
> refined structure (preferably published) as an
> approximation of the "correct" coordinates, in which the
> model bias no longer shows up.
>
> Would anyone be able to provide these for me?
> I would be grateful.
>
> -Daniel

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999
Previous message:
Subject: Wanted: Structure with Lots of Model Bias
From: himmel himmel {- at -} CABM {- dot -} RUTGERS {- dot -} EDU
Date: 2010-01-07		Next message:
Subject: Reg. Protein purification
From: Sivaraman Padavattan s {- dot -} padavattan {- at -} GMAIL {- dot -} COM
Date: 2010-01-08
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