[ccp4bb] off topic: multiple structural sequence alignment

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: Phaser: removing H in PDB increases the RFZ ?!
From: Eleanor Dodson ccp4 {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2010-01-12

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Subject: Re: off topic: multiple structural sequence alignment
From: Lari Lehtiö lari {- dot -} lehtio {- at -} ABO {- dot -} FI
Date: 2010-01-12

Subject: off topic: multiple structural sequence alignment
From: Ronnie Berntsson r {- dot -} berntsson {- at -} RUG {- dot -} NL
Date: 2010-01-12

Dear all,

A bit off the topic question perhaps.
I am trying to find a program which can do multiple structural sequence alignments. What I would like is a program which can take as input PDB codes (or files), and which will output a multiple sequence alignment in FASTA format with the full sequences of the supplied proteins intact. Preferably said server/program should be able to handle at least 20 input pdbs at once.
I've been looking around, but have so far failed to find a program which does this. If anyone knows of a program or server which could handle this, I would be very grateful.

Cheers,
Ronnie Berntsson

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: Phaser: removing H in PDB increases the RFZ ?!
From: Eleanor Dodson ccp4 {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2010-01-12

Next message:
Subject: Re: off topic: multiple structural sequence alignment
From: Lari Lehtiö lari {- dot -} lehtio {- at -} ABO {- dot -} FI
Date: 2010-01-12