Re: [ccp4bb] DSSP server

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

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Subject: Re: DSSP server
From: Guenter Fritz guenter {- dot -} fritz {- at -} UNI-KONSTANZ {- dot -} DE
Date: 2010-01-14

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Subject: Experience with experimental phasing in P21 with c cos Beta = - a/2 ?
From: Francis E Reyes Francis {- dot -} Reyes {- at -} COLORADO {- dot -} EDU
Date: 2010-01-14

Subject: Re: DSSP server
From: Nathaniel Echols nathaniel {- dot -} echols {- at -} GMAIL {- dot -} COM
Date: 2010-01-14

On Thu, Jan 14, 2010 at 7:02 AM, Schubert, Carsten [PRDUS] <
CSCHUBER@its.jnj.com> wrote:

> you could use ksDSSP, which is an OpenSource implementation of DSSP.
> Requires some compiling though and I am not sure if OSX is supported.
> You also need to compile the PDB record I/O libraries.
>

It runs fine on OS X, but I think I had to run 'ranlib' on the PDB library
to get it to compile properly. However, I've seen at least one structure
(1ywf) for which it produces incorrect results; this may not matter if you
just want to make figures, but it's problematic for any other uses.

I was able to download the DSSP source code from CMBI without signing
anything - but it's still proprietary and only free to academics. (And I
had no luck compiling it on a Mac, unfortunately.)

-Nat

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: DSSP server
From: Guenter Fritz guenter {- dot -} fritz {- at -} UNI-KONSTANZ {- dot -} DE
Date: 2010-01-14

Next message:
Subject: Experience with experimental phasing in P21 with c cos Beta = - a/2 ?
From: Francis E Reyes Francis {- dot -} Reyes {- at -} COLORADO {- dot -} EDU
Date: 2010-01-14