Re: [ccp4bb] Map transformation

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Map transformation
From: Rana Refaey dr_rr81 {- at -} HOTMAIL {- dot -} COM
Date: 2010-02-08

Next message:
Subject: refmac5 and sphericity restraints, 2nd attempt
From: Jan Abendroth jan {- dot -} abendroth {- at -} GMAIL {- dot -} COM
Date: 2010-02-08

Subject: Re: Map transformation
From: "Debreczeni, Judit" Judit {- dot -} Debreczeni {- at -} ASTRAZENECA {- dot -} COM
Date: 2010-02-08

I think the space-group and cell are missing:
It should be something like:
(transform-map imol rotation-matrix trans point radius space-group cell)

i.e. in your example, say:
(transform-map 13 (list 0.9956 -0.08709 -0.03537 -0.08702 -0.9962
0.003531
-0.03554 -0.0004371 -0.9994) (list 1.235 1.005 0.1625) (list 11.6806
-8.6401
-14.960) 10 "P 21 21 21" (list 45 100 39 90 90 90))
or some such.

But are you sure you actually need this? -- Extensions->Maps->Transform
map by LSQ does something similar...

JED.

(Oh, the coot documentation is misleading... shock horror!)

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-----Original Message-----
From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of
Rana Refaey
Sent: 08 February 2010 14:42
To: CCP4BB@JISCMAIL.AC.UK
Subject: [ccp4bb] Map transformation

Hi all,

I am trying to use the transform map command in coot but i am getting
the
following error
6:19: In expression (0.9956 -0.08709 -0.03537 ...)::6:19: Wrong type to
apply: 0.9956

the command that i used was:
(transform-map 13 (0.9956 -0.08709 -0.03537 -0.08702 -0.9962 0.003531
-0.03554 -0.0004371 -0.9994) (1.235 1.005 0.1625) (11.6806 -8.6401
-14.960) 10)

i have also added the word list before each group of numbers,
(transform-map 13 (list 0.9956 -0.08709 -0.03537 -0.08702 -0.9962
0.003531
-0.03554 -0.0004371 -0.9994) (list 1.235 1.005 0.1625) (list 11.6806
-8.6401
-14.960) 10)

and i got the following error,
arguments to transform-map incomprehensible: args: (13 (0.9956 -0.08709
-0.03537 -0.08702 -0.9962 0.003531 -0.03554 -4.371e-4 -0.9994) (1.235
1.005
0.1625) (11.6806 -8.6401 -14.96) 10)

I am not sure what i am doing wrong, could you please point me in the
right
direction ?

Many thanks

Regards,
Rana

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Map transformation
From: Rana Refaey dr_rr81 {- at -} HOTMAIL {- dot -} COM
Date: 2010-02-08

Next message:
Subject: refmac5 and sphericity restraints, 2nd attempt
From: Jan Abendroth jan {- dot -} abendroth {- at -} GMAIL {- dot -} COM
Date: 2010-02-08