[ccp4bb] Fitting molecule B7G or B8G using COOT

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

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Date: 2007-06-21

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From: Artem Evdokimov artem {- at -} XTALS {- dot -} ORG
Date: 2007-06-21

Subject: Fitting molecule B7G or B8G using COOT
From: U Sam us_x {- at -} HOTMAIL {- dot -} COM
Date: 2007-06-21

Hi everybody,
I am trying to short out to fit a molecule into a density but having problem.
It is n-beta-octyl-glucopyranoside into a electron density of my structure. The coordinate of this molecule I got from different from PDB. n-beta-octyl-glucopyranoside was present in the crystallization condition. I named it as "B8G" in the PDB.
In COOT under "file:monomer search library" I find "beta-heptyl-glucopyranoside" and named as "B7G". But when I tried to fit B8G in COOT and use "real space refine zone", its not working out but I get the following warning message.
"INFO:: using standard CCP4 Refmac dictionary to search for B8G
WARNING:: Failed to find restraints for :B8G: "

I appreciate help to overcome this.

Sam

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CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: Stereo grpahics and Virtual Reality
From: Andreas Forster docandreas {- at -} GMAIL {- dot -} COM
Date: 2007-06-21

Next message:
Subject: Re: Stereo grpahics and Virtual Reality
From: Artem Evdokimov artem {- at -} XTALS {- dot -} ORG
Date: 2007-06-21