[ccp4bb] AW: [ccp4bb] Ligplot for active sites without any ligand

- Protein crystallography

Main steps:

- Protein purification
- Crystallisation

Special:

- Programs for crystallography
- X-ray detectors

Basic tutorials:

   - Chemistry
   - Protein
   - Peptide
   - Amino Acids

Xtal community:

- CCP4BB

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: Distinguishing Between Na+ and H2O
From: Bernhard Rupp br {- at -} RUPPWEB {- dot -} ORG
Date: 2010-02-15

Next message:
Subject: Re: Distinguishing Between Na+ and H2O
From: Robbie Joosten robbie_joosten {- at -} HOTMAIL {- dot -} COM
Date: 2010-02-16

Subject: AW: Ligplot for active sites without any ligand
From: Marek Frischerkase frischerkasemarek {- at -} YAHOO {- dot -} DE
Date: 2010-02-16

Hi Katja,

I think you can do this just by hand in coot (environmental distances) or in pymol/ccp4mg, even if it´s diffult to show all residues around an active site in one picture.

M.

--- Katja Schleider schrieb am So, 14.2.2010:

Von: Katja Schleider
Betreff: [ccp4bb] Ligplot for active sites without any ligand
An: CCP4BB@JISCMAIL.AC.UK
Datum: Sonntag, 14. Februar 2010, 18:27

Dear BBs,

I am looking for a program to plot the network of the residues in the active site of my enzyme in 2D. I want to show how the residues differ in distances to each other in several variants. A Program just like ligplot, but also for active sites without a ligand.
Does anybody know such a program or can recommend one?
Thank you very much,

Katja

__________________________________________________
Do You Yahoo!?
Sie sind Spam leid? Yahoo! Mail verfügt über einen herausragenden Schutz gegen Massenmails.
http://mail.yahoo.com

__________________________________________________
Do You Yahoo!?
Sie sind Spam leid? Yahoo! Mail verfügt über einen herausragenden Schutz gegen Massenmails.
http://mail.yahoo.com

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: Distinguishing Between Na+ and H2O
From: Bernhard Rupp br {- at -} RUPPWEB {- dot -} ORG
Date: 2010-02-15

Next message:
Subject: Re: Distinguishing Between Na+ and H2O
From: Robbie Joosten robbie_joosten {- at -} HOTMAIL {- dot -} COM
Date: 2010-02-16