Re: [ccp4bb] 3D fitting

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

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Subject: postdoc position available immediately at Oklahoma State University
From: Junpeng Deng junpeng {- dot -} deng {- at -} OKSTATE {- dot -} EDU
Date: 2010-02-26

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Subject: Fwd: phases using XDS and SHELX after I3C magic triangle soak
From: Jeanine Amacher jeanine {- dot -} xtal {- at -} GMAIL {- dot -} COM
Date: 2010-02-26

Subject: Re: 3D fitting
From: Gerard DVD Kleywegt gerard {- at -} XRAY {- dot -} BMC {- dot -} UU {- dot -} SE
Date: 2010-02-26

But it still won't solve Miri's problem. I think what she is asking for is a
program that detects which atoms should be matched to which, irrespective of
their names (i.e., not assuming they are called " CA ") and order (i.e., not
nicely sequential such as amino-acid residues), and then applies the operator
that follows from that.

--dvd

On Fri, 26 Feb 2010, Kevin Cowtan wrote:

> SSM is also available in Coot and CCP4MG of course...
>
>
> Eleanor Dodson wrote:
>> would ssm serve your purpose?
>>
>> eleanor
>>
>> ebi or ccp4i
>>
>>
>>
>> Miri Hirshberg wrote:
>>> Sun., Jan. 17th 2010
>>> EBI
>>>
>>> Greetings,
>>>
>>> I am looking for a 3D structure superposition program which takes
>>> two structures and superpose them based only on the coordinates X,Y,Z
>>> regardless of of residue/atoms name.
>>>
>>> (both files are in PDB format)
>>>
>>> Thanks
>>> Miri
>>>
>>> ------------------------------------
>>> Dr Miri Hirshberg
>>> European Bioinformatics Institute UK
>>> PDBe - EBI -EMBL
>>> http://www.ebi.ac.uk/pdbe
>>>
>>> Phone: +44 (0) 1223 492647
>>> FAX: +44 (0) 1223 494468
>>> ------------------------------------
>

Best wishes,

--Gerard

******************************************************************
Gerard J. Kleywegt
Dept. of Cell & Molecular Biology University of Uppsala
Biomedical Centre Box 596
SE-751 24 Uppsala SWEDEN

http://xray.bmc.uu.se/gerard/ mailto:gerard@xray.bmc.uu.se
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CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: postdoc position available immediately at Oklahoma State University
From: Junpeng Deng junpeng {- dot -} deng {- at -} OKSTATE {- dot -} EDU
Date: 2010-02-26

Next message:
Subject: Fwd: phases using XDS and SHELX after I3C magic triangle soak
From: Jeanine Amacher jeanine {- dot -} xtal {- at -} GMAIL {- dot -} COM
Date: 2010-02-26