Re: [ccp4bb] Molrep error -

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

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Subject: Senior Scientist position in structural biology/immunology with applications in T cell and NK cell receptor recognition of MHC class I and class II complexes in Stockholm, Sweden
From: Adnane Achour Adnane {- dot -} Achour {- at -} KI {- dot -} SE
Date: 2010-02-28

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Subject: Re: units of f0, f', f''
From: Gerard Bricogne gb10 {- at -} GLOBALPHASING {- dot -} COM
Date: 2010-02-28

Subject: Re: Molrep error -
From: Chavas Leo ccp4hnaalas {- at -} GMAIL {- dot -} COM
Date: 2010-02-28

Dear Jon --

it looks to me that it is trying to open a file that does not exist
because of the path name... I'm not an expert in MolRep, but you
defined PATH_SCR and PATH_OUT with the same names; the problem might
then be that it tried to open a file located in the PATH_SCR/
PATH_OUT... (or the opposite). Perhaps if you try the following it
could work:

/usr/local/ccp4-6.1.0/ccp4-6.1.0/bin/molrep PATH_SCR "/home/caruthej/
bo3/ccp4/" PATH_OUT "bo3P1_11_molrep_" HKLIN "/home/caruthej/bo3/P1/
ccp4/merged.mtz" MODEL "/home/caruthej/bo3/P1/cns/model.pdb"

Sorry if it doesn't help.

Kind regards.

-- Leo --

On 27 Feb 2010, at 04:31, Jonathan Marvin Caruthers wrote:

> The program run with command: /usr/local/ccp4-6.1.0/ccp4-6.1.0/bin/
> molrep PATH_SCR "/home/caruthej/bo3/ccp4/bo3P1_11_molrep_" PATH_OUT
> "/home/caruthej/bo3/ccp4/bo3P1_11_molrep_" HKLIN "/home/caruthej/
> bo3/P1/ccp4/merged.mtz" MODEL "/home/caruthej/bo3/P1/cns/model.pdb"

------------------------------------------------------------
Chavas Leonard, Ph.D.
Assistant Professor
------------------------------------------------------------
Structural Biology Research Center
Photon Factory
High Energy Research Organization (KEK)
305-0801 Tsukuba Oho 1-1
Japan
------------------------------------------------------------
Tel: +81(0)29-864-5642 (4901)
Fax: +81(0)29-864-2801
e-mail: leonard.chavas@kek.jp
------------------------------------------------------------
Science Advisory Board (BIT Life Sciences)
Editorial Board (JAA)
------------------------------------------------------------
http://pfweis.kek.jp/~leo

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Next message:
Subject: Re: units of f0, f', f''
From: Gerard Bricogne gb10 {- at -} GLOBALPHASING {- dot -} COM
Date: 2010-02-28