Re: [ccp4bb] homology modelling using sequence alignment

- Protein crystallography

Main steps:

- Protein purification
- Crystallisation

Special:

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- X-ray detectors

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: Question about modeling SAM into a protein structure
From: Paul Emsley paul {- dot -} emsley {- at -} BIOCH {- dot -} OX {- dot -} AC {- dot -} UK
Date: 2010-03-04

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Subject: column labels for SIRAS/MIRAS
From: Yogesh Gupta yogesh {- dot -} gupta25 {- at -} GMAIL {- dot -} COM
Date: 2010-03-04

Subject: Re: homology modelling using sequence alignment
From: Sean Seaver sean {- at -} P212121 {- dot -} COM
Date: 2010-03-04

>I am trying to create a homology model of a coiled-coil for use in
molecular >replacement. I have a template poly-ala coiled coil that I like
to use, so that is fine. >I want to thread my sequence onto the helix and am
trying to find a server/easy >program that will do this.

As a starting point I put together a list of 27 homology servers:

http://bit.ly/KEMsT

Unfortunately, I have not used all of them so am unable to suggest the
easiest one for your situation, but hope it helps.

Sean

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Next message:
Subject: column labels for SIRAS/MIRAS
From: Yogesh Gupta yogesh {- dot -} gupta25 {- at -} GMAIL {- dot -} COM
Date: 2010-03-04