[ccp4bb] compiling problems ccp4-6.0.2 and gcc-4.1.2

- Protein crystallography

Main steps:

- Protein purification
- Crystallisation

Special:

- Programs for crystallography
- X-ray detectors

Basic tutorials:

   - Chemistry
   - Protein
   - Peptide
   - Amino Acids

Xtal community:

- CCP4BB

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

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Subject: compiling problems ccp4-6.0.2 and gcc-4.1.2
From: Miguel_Ortiz-Lombardía ibdeno {- at -} GMAIL {- dot -} COM
Date: 2007-06-28

Dear all,

Has anyone succeeded at compiling the latest release of CCP4 with gcc-4.1.2
This is the compiler version in Ubuntu 7.04 (Feisty Fawn)

At the very beginning (ccif lib compilation), I get this error:

/usr/bin/ld: final link failed: Nonrepresentable section on output

I looked around and found that:

export CC="gcc -fno-stack-protector"

might help. It did help, and the compilation proceeded... to the program
solomon, where I get again:

eval gcc -fno-stack-protector ${pdbhtf_FLAGS-"-O -DGFORTRAN -DPROTOTYPE
-fPIC"} -o pdbhtf pdbhtf.o -Wl,-rpath,/home/miguel/Desktop/ccp4-build/ccp4-
6.0.2/lib -lm && rm -f pdbhtf.o
/home/miguel/Desktop/ccp4-build/ccp4-6.0.2/src/solomon_/cmap_io.c: In
function 'WriteMap':
/home/miguel/Desktop/ccp4-build/ccp4-6.0.2/src/solomon_/cmap_io.c:356:
warning: passing arg 3 of 'mat4_to_symop' from incompatible pointer
/usr/bin/ld: solomon: hidden symbol `__stack_chk_fail_local' in
/usr/lib/libc_nonshared.a(stack_chk_fail_local.oS) is referenced by DSO
/usr/bin/ld: final link failed: Nonrepresentable section on output

Any clues anyone?
Thanks a lot!

Miguel
--
correo-e: ibdeno@gmail.com
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Je suis de la mauvaise herbe,
Braves gens, braves gens,
Je pousse en liberté
Dans les jardins mal fréquentés!

Georges Brassens

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Next message:
Subject: First Announcement - 6th NCCR Practical Course on Biomolecular Modelling
From: Patrick Sticher sticher {- at -} BIOC {- dot -} UNIZH {- dot -} CH
Date: 2007-06-28