Re: [ccp4bb] sequence from pdb

- Protein crystallography

Main steps:

- Protein purification
- Crystallisation

Special:

- Programs for crystallography
- X-ray detectors

Basic tutorials:

   - Chemistry
   - Protein
   - Peptide
   - Amino Acids

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

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Subject: Re: sequence from pdb
From: Ian Tickle ianjt05 {- at -} GMAIL {- dot -} COM
Date: 2010-04-04

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Subject: Re: sequence from pdb
From: Iain Kerr ikerr {- at -} CMP {- dot -} UCSF {- dot -} EDU
Date: 2010-04-04

Subject: Re: sequence from pdb
From: Pavel Afonine PAfonine {- at -} LBL {- dot -} GOV
Date: 2010-04-04

Hi Rex,

> Is there software that will extract a protein sequence in either 3
> letter or single letter code from a given pdb file?

yes. For example:

phenix.print_sequence model.pdb

More details: www.phenix-online.org

Pavel.

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: sequence from pdb
From: Ian Tickle ianjt05 {- at -} GMAIL {- dot -} COM
Date: 2010-04-04

Next message:
Subject: Re: sequence from pdb
From: Iain Kerr ikerr {- at -} CMP {- dot -} UCSF {- dot -} EDU
Date: 2010-04-04