Re: [ccp4bb] programs to check the structure of DNA

- Protein crystallography

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: programs to check the structure of DNA
From: Alessandra Pesce pesce {- at -} GE {- dot -} INFM {- dot -} IT
Date: 2010-04-09

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From: Chris Meier crystallography {- at -} CHRISTOPHMEIER {- dot -} COM
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Subject: Re: programs to check the structure of DNA
From: Jovine Luca luca {- dot -} jovine {- at -} KI {- dot -} SE
Date: 2010-04-09

Ciao Alessandra,

A couple of pointers:

http://gbio-pbil.ibcp.fr/Curves_plus/Curves+.html

http://rutchem.rutgers.edu/~xiangjun/3DNA/

HTH,

Luca

----------------------------------------------------------------
Luca Jovine, Ph.D.
Group Leader & EMBO Young Investigator
Karolinska Institutet
Department of Biosciences and Nutrition & Center for Biosciences
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On Apr 9, 2010, at 10:25 AM, Alessandra Pesce wrote:

> Dear All,
> I am looking for available programs and/or websites able to check the structure of DNA in DNA-protein complexes. I need to evaluate the DNA bending, its backbone distortion, the alteration of the base pairing, and its interaction with the protein. The aim is to compare in easy and quick way different conformation of DNA in different DNA-protein complexes. Can anybody help me?
> Thanks in advance.
> Cheers
> Alessandra
>
> *************************************************************
> Alessandra Pesce, PhD
> Department of Physics
> University of Genova
> Via Dodecaneso 33
> 16146 Genova, Italy
>
> Tel.(DIFI) ++39 010 353 6243
6309
> e-mail pesce@ge.infm.it
> *************************************************************

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: programs to check the structure of DNA
From: Alessandra Pesce pesce {- at -} GE {- dot -} INFM {- dot -} IT
Date: 2010-04-09

Next message:
Subject: freezing crystals grown in isopropanol condition
From: Chris Meier crystallography {- at -} CHRISTOPHMEIER {- dot -} COM
Date: 2010-04-09