Re: [ccp4bb] programs to check the structure of DNA

- Protein crystallography

Main steps:

- Protein purification
- Crystallisation

Special:

- Programs for crystallography
- X-ray detectors

Basic tutorials:

   - Chemistry
   - Protein
   - Peptide
   - Amino Acids

Xtal community:

- CCP4BB

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: freezing crystals grown in isopropanol condition
From: James Holton JMHolton {- at -} LBL {- dot -} GOV
Date: 2010-04-09

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Subject: Re: freezing crystals grown in isopropanol condition
From: Nathaniel Clark nathanielclar5 {- at -} GMAIL {- dot -} COM
Date: 2010-04-09

Subject: Re: programs to check the structure of DNA
From: Maia Cherney chern {- at -} UALBERTA {- dot -} CA
Date: 2010-04-09

I know two programs;
3DNA by Lu and curves by Lavery and Sklenar. 3DNA is easier to use, it
can also make input for the Curves.
Maia

Alessandra Pesce wrote:
>
> Dear All,
>
> I am looking for available programs and/or websites able to check the
> structure of DNA in DNA-protein complexes. I need to evaluate the DNA
> bending, its backbone distortion, the alteration of the base pairing,
> and its interaction with the protein. The aim is to compare in easy
> and quick way different conformation of DNA in different DNA-protein
> complexes. Can anybody help me?
>
> Thanks in advance.
>
> Cheers
>
> Alessandra
>
>
> *************************************************************
> Alessandra Pesce, PhD
> Department of Physics
> University of Genova
> Via Dodecaneso 33
> 16146 Genova, Italy
>
> Tel.(DIFI) ++39 010 353 6243
6309
> e-mail pesce@ge.infm.it
> *************************************************************
>

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: freezing crystals grown in isopropanol condition
From: James Holton JMHolton {- at -} LBL {- dot -} GOV
Date: 2010-04-09

Next message:
Subject: Re: freezing crystals grown in isopropanol condition
From: Nathaniel Clark nathanielclar5 {- at -} GMAIL {- dot -} COM
Date: 2010-04-09