Re: [ccp4bb] How to show the ligand in my protein as sticks....???

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: How to show the ligand in my protein as sticks....???
From: Hussain Bhukyagps hsngps {- at -} YAHOO {- dot -} COM
Date: 2010-04-12

Next message:
Subject: Re: How to show the ligand in my protein as sticks....???
From: Hussain Bhukyagps hsngps {- at -} YAHOO {- dot -} COM
Date: 2010-04-12

Subject: Re: How to show the ligand in my protein as sticks....???
From: Jason Vertrees jason {- dot -} vertrees {- at -} SCHRODINGER {- dot -} COM
Date: 2010-04-12

Hussain,

You can do a couple things.

(1) At the PyMOL command line type:

as sticks, organic

(2) Create an organic selection using the mouse via the object menu, A >
Generate > Selection > Organic. PyMOL makes a new selection for you (if
there is at least one organic small molecule). Then, from the new selection
select S > As > Sticks.

By the way, "A > Generate > Selection" means select "A" for your protein of
choice, then from that menu select "Generate" then "Selection", ... and so
on.

Hope this helps,

-- Jason

On Mon, Apr 12, 2010 at 2:15 PM, Hussain Bhukyagps wrote:

> Dear all
> i'm trying to show ligand which is in the pdb of my protein as sticks, but
> it is showing the folowing message in the pymol Tcl/Tk GUI.
>
> You clicked /1204//X/TL1`0/C10
> Selector: selection "sele" defined with 45 atoms.
>
> but it not responding to that command.
> can any one help..??
>
>
>
> thank you.
>
> Send free SMS to your Friends on Mobile from your Yahoo! Messenger.
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--
Jason Vertrees, PhD
PyMOL Product Manager
Schrodinger, LLC

(e) Jason.Vertrees@schrodinger.com
(o) +1 (603) 374-7120

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: How to show the ligand in my protein as sticks....???
From: Hussain Bhukyagps hsngps {- at -} YAHOO {- dot -} COM
Date: 2010-04-12

Next message:
Subject: Re: How to show the ligand in my protein as sticks....???
From: Hussain Bhukyagps hsngps {- at -} YAHOO {- dot -} COM
Date: 2010-04-12