Re: [ccp4bb] Structure Based Sequence Alignment

- Protein crystallography

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: Is it possible for the Tris buffer to strip the Zn ions from the Zinc Finger motif of a protein?
From: Guenter Fritz guenter {- dot -} fritz {- at -} UNI-KONSTANZ {- dot -} DE
Date: 2010-05-25

Next message:
Subject: Re: Alignment software
From: Victor Alves vdalves {- at -} FMV {- dot -} UTL {- dot -} PT
Date: 2010-05-25

Subject: Re: Structure Based Sequence Alignment
From: Ashley Buckle ashley {- dot -} buckle {- at -} MED {- dot -} MONASH {- dot -} EDU {- dot -} AU
Date: 2010-05-25

Sorry, the link was broken (problem with tomcat not restarting properly): Use http://pxgrid.med.monash.edu.au/mustangmr-server
cheers
Ashley

On 26/05/2010, at 8:08 AM, Dhirendra K Simanshu wrote:

> Hi....
>
> It seems the link (the one you send) is not working!
> Can you resend the correct link!
> Thanks
> Dhirendra
>
> On Tue, May 25, 2010 at 4:05 PM, Ashley Buckle wrote:
>
>
> On 26/05/2010, at 6:53 AM, Jürgen Bosch wrote:
>
>> http://ww2.cs.mu.oz.au/~arun/Site/mustang.html
>
> We have built a web server for this at http://pxgrid.med.monash.edu.au:8080/mustangserver/
>
>
> Cheers
> Ashley
>
>>
>> http://tcoffee.vital-it.ch/cgi-bin/Tcoffee/tcoffee_cgi/index.cgi?stage1=1&daction=EXPRESSO(3DCoffee)::Regular
>>
>> or maybe what you are searching for is Consurf ?
>> http://consurf.tau.ac.il/
>>
>> Jürgen
>>
>> On May 25, 2010, at 2:39 PM, Muhammed bashir Khan wrote:
>>
>>> Dear All;
>>>
>>> Can some body tell me a website for structure based sequence alignment,
>>> which can also pin point the similar and identical residues in different
>>> colors.
>>>
>>> regards
>>>
>>> Bashir
>>>
>>>
>>>
>>>
>>> --
>>> Muhammad Bashir Khan
>>> Department for Biomolecular Structural Chemistry
>>> Max F. Perutz Laboratories
>>> University of Vienna
>>> Campus Vienna Biocenter 5
>>> A-1030 Vienna
>>> Austria
>>>
>>> Phone: +43(1)427752224
>>> Fax: +43(1)42779522
>>
>> -
>> Jürgen Bosch
>> Johns Hopkins Bloomberg School of Public Health
>> Department of Biochemistry & Molecular Biology
>> Johns Hopkins Malaria Research Institute
>> 615 North Wolfe Street, W8708
>> Baltimore, MD 21205
>> Phone: +1-410-614-4742
>> Lab: +1-410-614-4894
>> Fax: +1-410-955-3655
>> http://web.mac.com/bosch_lab/
>>
>
>
>
> --
> Dhirendra K Simanshu
> Research Scholar
> Memorial Sloan-Kettering Cancer Center
> New York, NY, USA

Associate Professor Ashley M Buckle
NHMRC Senior Research Fellow
The Department of Biochemistry and Molecular Biology,
Faculty of Medicine
Monash University, Clayton, Vic 3800
Australia

http://www.med.monash.edu.au/biochem/staff/abuckle.html
iChat/AIM: blindcaptaincat
skype: ashley.buckle
Tel: (613) 9902 9313 (office)
Fax : (613) 9905 4699
mobile: 0430 913031

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Next message:
Subject: Re: Alignment software
From: Victor Alves vdalves {- at -} FMV {- dot -} UTL {- dot -} PT
Date: 2010-05-25