Re: [ccp4bb] how to convert matrix to angle

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: how to convert matrix to angle
From: "Das, Debanu" debanu {- at -} SLAC {- dot -} STANFORD {- dot -} EDU
Date: 2007-07-07

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From: James Stroud jstroud {- at -} MBI {- dot -} UCLA {- dot -} EDU
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Subject: Re: how to convert matrix to angle
From: Bernhard Rupp bernhardrupp {- at -} SBCGLOBAL {- dot -} NET
Date: 2007-07-07

Not that I want to open a can of worms here...
but could someone explain what is meant
with 'angle between domains'?

Thx, br

-----Original Message-----
From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Das,
Debanu
Sent: Saturday, July 07, 2007 7:51 PM
To: CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] how to convert matrix to angle

Hi,
You can also use LSQKAB in CCP4 to get the angle between two similar
domains.

-Debanu.

-----Original Message-----
From: CCP4 bulletin board on behalf of Kay Diederichs
Sent: Sat 7/7/2007 7:30 AM
To: CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] how to convert matrix to angle

Jiamu Du schrieb:
> Dear all:
> I want to calculate the rotation angle between two similar domains. By
> using Coot, I can superposr the two domain and get the rotation matrix.
> But how to convert this matrix to an angle. Is there any program can
> calculate this ?
> Thanks.
>
Jiamu Du,

If you have the rotation matrix
a11 a12 a13
a21 a22 a23
a31 a32 a33

then

(a11 + a22 + a33 - 1) / 2

is the cosine of the angle you're looking for.

HTH,

Kay
--
Kay Diederichs http://strucbio.biologie.uni-konstanz.de
email: Kay.Diederichs@uni-konstanz.de Tel +49 7531 88 4049 Fax 3183
Fachbereich Biologie, Universität Konstanz, Box M647, D-78457 Konstanz

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: how to convert matrix to angle
From: "Das, Debanu" debanu {- at -} SLAC {- dot -} STANFORD {- dot -} EDU
Date: 2007-07-07

Next message:
Subject: [FIXED] Kay Diederichs Email
From: James Stroud jstroud {- at -} MBI {- dot -} UCLA {- dot -} EDU
Date: 2007-07-07