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Re: [ccp4bb] Converting cif-files into pdb-files / reading cif -files into coot |
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CCP4bb navigationCCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999Subject: Re: Converting cif-files into pdb-files / reading cif -files into coot From: Ed Pozharski epozh001 {- at -} UMARYLAND {- dot -} EDU Date: 2010-06-01 http://sw-tools.pdb.org/apps/CIFTr/ On Tue, 2010-06-01 at 15:21 +0200, Christian Engel wrote: > Dear All, > > I am looking for a ccp4 program that reads in cif-files and converts > them into pdb-files, including the CRYST1 card. Can anybody suggest a > solution? I didn't find any in ccp4i, e.g. the coordinate utilities. > > I also tried COOT to read in cif-files (downloaded from the pdb > server). For one example it crashed, for others it doesn't colour the > bonds properly if "Bonds (Colour by Atom)" is chosen but shows > all bonds in one colour. Is that a known feature? If I save these > coordinates in pdb-format and try to read it back, I get an ERROR > saying: "Wrong ASCII format of an integer". > > > Thanks for any suggestions > Christian Engel > > > > Mit freundlichen Grüßen / Best regards / Cordialement > > Dr. Christian Engel > > Sanofi-Aventis Deutschland GmbH > R&D CAS Structural Biology FFM > Industriepark Hoechst > Bldg. G877, Room 020 > D-65926 Frankfurt am Main > t: +49 69 305 12946 > f: +49 69 305 80169 > w:www.sanofi-aventis.de > > 125 Jahre Arzneimittel aus Deutschland von sanofi-aventis > > ********************************************************************************************************************************************************************* > Sanofi-Aventis Deutschland GmbH · Sitz der Gesellschaft: > Frankfurt am Main · Handelsregister: Frankfurt am Main, Abt. B > Nr. 40661 > Vorsitzender des Aufsichtsrats: Hanspeter Spek - > Geschäftsführer: Dr. Martin Siewert (Vorsitzender), Ulf > Bialojahn, Dr. Matthias Braun, > Peter Guenter, Prof. Dr. Dr. Werner Kramer, Dr. Klaus Menken, > Dr. Heinz Riederer > ********************************************************************************************************************************************************************* > > -- Edwin Pozharski, PhD, Assistant Professor University of Maryland, Baltimore ---------------------------------------------- When the Way is forgotten duty and justice appear; Then knowledge and wisdom are born along with hypocrisy. When harmonious relationships dissolve then respect and devotion arise; When a nation falls to chaos then loyalty and patriotism are born. ------------------------------ / Lao Tse / CCP4bb navigationCCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999 |
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