Re: [ccp4bb] Pymol, labels, maps

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: shelx HKLF4 to mtz conversion?
From: Tim Grune tim {- dot -} grune {- at -} SYNCHROTRON {- dot -} VIC {- dot -} GOV {- dot -} AU
Date: 2007-07-10

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Subject: program to create cartoon image from a PDB file which have only C-alpha coordinates
From: Jhon Thomas jhon1 {- dot -} thomas {- at -} GMAIL {- dot -} COM
Date: 2007-07-11

Subject: Re: Pymol, labels, maps
From: U Sam us_x {- at -} HOTMAIL {- dot -} COM
Date: 2007-07-11

Hi,
I like to short out how I can see map in pymol and bobscript.
When I am using pymol, I cann't see map file. Same map file I can see in Coot.
Map file (created for O using from .fcf shelxpro) is also not coming; extenstion .xplor (or .dsn6) not working either.

message:
........
Crystal: Unit Cell Volume 845180.
ExecutiveLoad: "popp_fcf_sigmaa1_FP1_map.ccp4" loaded as "popp_fcf_sigmaa1_FP1_map", through state 0.

How one can label symbols in pymols.
Example shown at "http://www.pymolwiki.org/index.php/Label" does not give symbolic label.

In bobscript when I use map file (created using shelxpro for O format) as per the example shown in
"http://www.strubi.ox.ac.uk/bobscript/example3.html" error message comes.

message:
.....
contouring map shelx at 4.00
Error: no graphical segments to output
end_plot
^^^^^^^^
line number 36

Maximum actual usage of allocated memory:
60606 out of 1200000 "map" points used (leaving 4.3 Mb unused)

Line number 36 is "end_plot". I am not sure why is this error for,

Appreciate suggestion and help.
Thanks
Sam
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CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: shelx HKLF4 to mtz conversion?
From: Tim Grune tim {- dot -} grune {- at -} SYNCHROTRON {- dot -} VIC {- dot -} GOV {- dot -} AU
Date: 2007-07-10

Next message:
Subject: program to create cartoon image from a PDB file which have only C-alpha coordinates
From: Jhon Thomas jhon1 {- dot -} thomas {- at -} GMAIL {- dot -} COM
Date: 2007-07-11