Re: [ccp4bb] Pymol, labels, maps

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

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Subject: Re: Metal-ligand(s) positioning following refinement...
From: Edward Snell esnell {- at -} HWI {- dot -} BUFFALO {- dot -} EDU
Date: 2007-07-11

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Subject: Re: Pymol, labels, maps
From: Roger Rowlett rrowlett {- at -} MAIL {- dot -} COLGATE {- dot -} EDU
Date: 2007-07-11

Instructions for reading CCP4-format maps into pymol can be found in the
pymol wiki. Point your browser to
http://www.pymolwiki.org/index.php/Display_CCP4_Maps.

--
------------------------------------------------------------------------
Roger S. Rowlett
Professor
Colgate University Presidential Scholar
Department of Chemistry
Colgate University
13 Oak Drive
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email: rrowlett@mail.colgate.edu

U Sam wrote:
> Hi,
> I like to short out how I can see map in pymol and bobscript.
> When I am using pymol, I cann't see map file. Same map file I can see in Coot.
> Map file (created for O using from .fcf shelxpro) is also not coming; extenstion .xplor (or .dsn6) not working either.
>
> message:
> ........
> Crystal: Unit Cell Volume 845180.
> ExecutiveLoad: "popp_fcf_sigmaa1_FP1_map.ccp4" loaded as "popp_fcf_sigmaa1_FP1_map", through state 0.
>
> How one can label symbols in pymols.
> Example shown at "http://www.pymolwiki.org/index.php/Label" does not give symbolic label.
>
> In bobscript when I use map file (created using shelxpro for O format) as per the example shown in
> "http://www.strubi.ox.ac.uk/bobscript/example3.html" error message comes.
>
> message:
> .....
> contouring map shelx at 4.00
> Error: no graphical segments to output
> end_plot
> ^^^^^^^^
> line number 36
>
> Maximum actual usage of allocated memory:
> 60606 out of 1200000 "map" points used (leaving 4.3 Mb unused)
>
>
> Line number 36 is "end_plot". I am not sure why is this error for,
>
> Appreciate suggestion and help.
> Thanks
> Sam
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CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: Metal-ligand(s) positioning following refinement...
From: Edward Snell esnell {- at -} HWI {- dot -} BUFFALO {- dot -} EDU
Date: 2007-07-11

Next message:
Subject: Job vacancy for Coot developer at York...
From: Kevin Cowtan cowtan {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2007-07-11