Re: [ccp4bb] Help with coordinate file

- Protein crystallography

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

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From: German Gomez germanag {- at -} YAHOO {- dot -} COM
Date: 2007-07-24

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Subject: Re: Help with coordinate file
From: Edward Berry eaberry {- at -} LBL {- dot -} GOV
Date: 2007-07-24

artis@CHEMISTRY.MONTANA.EDU wrote:

> Hello Mona,
> I am guessing you have the atom name,number and coordinates in your file.
> I did something like that and Openbabel will convert it to the pdb file
> you desire but as far as I know, you will have to assign a residue name to
> the atom yourself. I did this by superimposition on the original file and
> manually naming the atoms in a text editor.

As has been pointed out on this BBS before, the text editor "nedit"
is very good for this because of the ability to cut and paste columns,
i.e rectangular selections of text. Hold down the control key and
drag from upper right to lower left corner (or v.v.) to select
the column with residue names, copy, then select the same
area in the defective file and paste. (Make sure the two
selections have the same number of residues and atoms
in each residue)

Get nedit (if you don't have it) from nedit.org
or "yum install nedit"

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Low B factors Resolved
From: German Gomez germanag {- at -} YAHOO {- dot -} COM
Date: 2007-07-24

Next message:
Subject: Re: FPLC vs Duo Flow
From: Filip Van Petegem filip {- dot -} vanpetegem {- at -} GMAIL {- dot -} COM
Date: 2007-07-24