Re: [ccp4bb] Volume calculation of a crevice

- Protein crystallography

Main steps:

- Protein purification
- Crystallisation

Special:

- Programs for crystallography
- X-ray detectors

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   - Amino Acids

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

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From: Edward Berry eaberry {- at -} LBL {- dot -} GOV
Date: 2007-08-03

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Subject: Re: Volume calculation of a crevice
From: "Murray, James W" j {- dot -} w {- dot -} murray {- at -} IMPERIAL {- dot -} AC {- dot -} UK
Date: 2007-08-03

Dear Enrique,

VOIDOO does what you want. http://xray.bmc.uu.se/usf/voidoo_man.html

Other similar programs are CAVENV in the CCP4 suite, and CAVER (http://loschmidt.chemi.muni.cz/caver/), which finds tunnels, and gives you tunnel radii.

best wishes

James

Dr. James Murray
Biochemistry Building
Department of Biological Sciences
Imperial College London
London, SW7 2AZ
Tel: +44 (0)20 7594 5276

Dr. James Murray
Biochemistry Building
Department of Biological Sciences
Imperial College London
London, SW7 2AZ
Tel: +44 (0)20 7594 5276

-----Original Message-----
From: CCP4 bulletin board on behalf of Enrique Rudiño-Piñera
Sent: Fri 03/08/2007 16:53
To: CCP4BB@JISCMAIL.AC.UK
Subject: [ccp4bb] Volume calculation of a crevice

Dear All,

I am wondering if you know a program to calculate the volume of a particular
crevice in a PDB we are analysing.

Thank you in advance!

Enrique

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: resolution vs ramachandran
From: Edward Berry eaberry {- at -} LBL {- dot -} GOV
Date: 2007-08-03

Next message:
Subject: Re: resolution vs ramachandran
From: price {- at -} UCHICAGO {- dot -} EDU price {- at -} UCHICAGO {- dot -} EDU
Date: 2007-08-03