Quick navigation: Home   |    Site Map   ||    References   |    Biography   ||    Copyright   |    Other copyright   |    Contact us   |    Advert   |   
 

Re: [ccp4bb] The importance of USING our validation tools

- Protein crystallography

Main steps:

   - Protein purification
   - Crystallisation

Special:

   - Programs for crystallography
   - X-ray detectors

Basic tutorials:

   - Chemistry
   - Protein
   - Peptide
   - Amino Acids

Xtal community:

   - CCP4BB

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999
Previous message:
Subject: Re: The importance of USING our validation tools
From: Dale Tronrud det102 {- at -} UOXRAY {- dot -} UOREGON {- dot -} EDU
Date: 2007-08-23
Next message:
Subject: Re: The importance of USING our validation tools
From: "Axel T {- dot -} Brunger" brunger {- at -} STANFORD {- dot -} EDU
Date: 2007-08-23


Subject: Re: The importance of USING our validation tools
From: Petr Leiman leiman {- at -} PURDUE {- dot -} EDU
Date: 2007-08-23

----- Original Message -----
From: "Jenny Martin"
To:
Sent: Thursday, August 23, 2007 5:46 PM
Subject: Re: [ccp4bb] The importance of USING our validation tools

> My question is, how could crystals with 80% or more solvent diffract so
> well? The best of the three is 1.9A resolution with I/sigI 48 (top shell
> 2.5). My experience is that such crystals diffract very weakly.

You must be thinking about Mark van Raaij's T4 short tail fibre structures.
Yes, the disorder in those crystals is extreme. There are ~100-150 A thick
disordered layers between the ~200 A thick layers of ordered structure. The
diffraction pattern does not show any anomalies (as far as I can remember
from 6 years ago). The spots are round, there are virtually no spots not
covered by predictions, and the crystals diffract to 1.5A resolution. The
disordered layers are perpendicular to the threefold axis of the crystal.
The molecule is a trimer and sits on the threefold axis. It appears that the
ordered layers somehow know how to position themselves across the disordered
layers. I agree here with Michael Rossmann that in these crystals the
ordered layers are held together by faith.
Mark integrated the dataset in lower space groups, but the disordered stuff
was not visible anyway. He will probably add more to the discussion.

Petr


>
> Any thoughts?
>
> Cheers,
> Jenny




ProteinCrystallography.org: Copyright 2006-2010 by Quid United Ltd