Re: [ccp4bb] adxv

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: Protein-DNA complex crystallization
From: Francis E Reyes Francis {- dot -} Reyes {- at -} COLORADO {- dot -} EDU
Date: 2011-11-21

Next message:
Subject: Re: Protein-DNA complex crystallization
From: sxn214 {- at -} psu {- dot -} edu sxn214 {- at -} PSU {- dot -} EDU
Date: 2011-11-21

Subject: Re: adxv
From: "Edward A {- dot -} Berry" BerryE {- at -} UPSTATE {- dot -} EDU
Date: 2011-11-21

yum install lesstif ?

but wouldn't the motif stuff be required for the X-server, i.e. your terminal, not for the
server running adxv?

Rajesh kumar wrote:
> Dear Mark,
>
> $ locate XKeysymDB - didnt come with any thing suggests probably openmotif lib is not
> installed.
> I linux server has Fedora and I am using latest version of Adxv so details on the sbgrid
> suggest its same problem.
>
> So how would I fix this.
>
> Thanks for your time.
>
> Regards
> Rajesh
>
>
> > Date: Sun, 20 Nov 2011 23:18:32 +0000
> > Subject: Re: [ccp4bb] adxv
> > From: mark.x.brooks@gmail.com
> > To: ccp4_sc@hotmail.com
> > CC: CCP4BB@jiscmail.ac.uk
> >
> > Dear Rajesh,
> > Are you using the Openmotif library? If so, do you
> > have an XKeysymDB file installed?
> > In as shell, issue:
> > $ locate XKeysymDB
> > You may need to symlink it to /usr/X11R6/lib/X11/XKeysymDB if it is
> > elsewhere [1].
> > I suspect you're not the only one to have seen this [2].
> >
> > I hope this helps.
> >
> > Mark
> > [1]
> ftp://ftp.parallelgeo.com/SPW_Products/Linux/Current_Release/ReadMe_for_recent_Linux_distributions.txt
> > [2] http://sbgrid.org/news/newsletters/2009/06 (search for the string "adxv")
> >
> >
> > On 20 November 2011 19:45, Rajesh kumar wrote:
> > >
> > > Dear Tim,
> > > Thanks. Your suggestion of adding to PATH works and its not completely functional may
> be due to the Ximg/ssh or some thing to do with display.
> > > All three windows opened but couldn't open any image as it didn't display in the list
> of autoload window. Pattern shows *.0.
> > >
> > > $adxv pin8_1_180.img
> > >
> > > (standard_in) 1: parse error
> > > (standard_in) 1: parse error
> > > (standard_in) 1: parse error
> > > beam_center x = pixels , mm
> > > beam_center y = pixels , mm
> > > distance = mm
> > > overload = counts
> > > pixelsize = 0.172 mm
> > > wavelength = Angstroem
> > > Adxv Version 1.9.4-beta
> > > Copyright (C) 1994-2007 by Andrew Arvai, Area Detector Systems Corporation
> > > Using 24-bit TrueColor visual
> > > Warning: translation table syntax error: Unknown keysym name: osfActivate
> > > Warning: ... found while parsing ':osfActivate: ManagerParentActivate()'
> > > Warning: String to TranslationTable conversion encountered errors
> > > Warning: translation table syntax error: Unknown keysym name: osfBeginLine
> > > Warning: ... found while parsing ':osfBeginLine: ManagerGadgetTraverseHome()'
> > > Warning: String to TranslationTable conversion encountered errors
> > > Warning: translation table syntax error: Unknown keysym name: osfHelp
> > > Warning: ... found while parsing ':osfHelp: ManagerGadgetHelp()'
> > > Warning: String to TranslationTable conversion encountered errors
> > > Warning: translation table syntax error: Unknown keysym name: osfActivate
> > > Warning: ... found while parsing ':osfActivate: ManagerParentActivate()'
> > > Warning: String to TranslationTable conversion encountered errors
> > > Warning: translation table syntax error: Unknown keysym name: osfActivate
> > > Warning: ... found while parsing ':osfActivate: PrimitiveParentActivate()'
> > > Warning: String to TranslationTable conversion encountered errors
> > > Warning: translation table syntax error: Unknown keysym name: osfHelp
> > > Warning: ... found while parsing ':osfHelp: Help()'
> > > Warning: String to TranslationTable conversion encountered errors
> > > Warning: translation table syntax error: Unknown keysym name: osfActivate
> > > Warning: ... found while parsing ':osfActivate: PrimitiveParentActivate()'
> > > Warning: String to TranslationTable conversion encountered errors
> > > Warning: translation table syntax error: Unknown keysym name: osfCancel
> > > Warning: ... found while parsing ':osfCancel: MenuEscape()'
> > > Warning: String to TranslationTable conversion encountered errors
> > > Warning: translation table syntax error: Unknown keysym name: osfSelect
> > > Warning: ... found while parsing ':osfSelect: ArmAndActivate()'
> > > Warning: String to TranslationTable conversion encountered errors
> > > Warning: translation table syntax error: Unknown keysym name: osfActivate
> > > Warning: ... found while parsing ':osfActivate: PrimitiveParentActivate()'
> > > Warning: String to TranslationTable conversion encountered errors
> > > Warning: Locale not supported for XmbTextListToTextProperty
> > > Warning: Cannot convert XmString to compound text
> > > Warning: translation table syntax error: Unknown keysym name: osfPrimaryPaste
> > > Warning: ... found while parsing ':m osfPrimaryPaste:cut-primary()'
> > > Warning: String to TranslationTable conversion encountered errors
> > > Warning: translation table syntax error: Unknown keysym name: osfActivate
> > > Warning: ... found while parsing ':osfActivate: PrimitiveParentActivate()'
> > > Warning: String to TranslationTable conversion encountered errors
> > > Warning: translation table syntax error: Unknown keysym name: osfActivate
> > > Warning: ... found while parsing ':osfActivate: PrimitiveParentActivate()'
> > > Warning: String to TranslationTable conversion encountered errors
> > > Warning: translation table syntax error: Unknown keysym name: osfSelect
> > > Warning: ... found while parsing ':osfSelect: ArmAndActivate()'
> > > Warning: String to TranslationTable conversion encountered errors
> > > Warning: translation table syntax error: Unknown keysym name: osfPrimaryPaste
> > > Warning: ... found while parsing ':m osfPrimaryPaste:cut-primary()'
> > > Warning: String to TranslationTable conversion encountered errors
> > > Warning: translation table syntax error: Unknown keysym name: osfSelect
> > > Warning: ... found while parsing ':osfSelect: ManagerGadgetSelect()'
> > > Warning: String to TranslationTable conversion encountered errors
> > > Warning: translation table syntax error: Unknown keysym name: osfSelect
> > > Warning: ... found while parsing ':osfSelect: MenuBarGadgetSelect()'
> > > Warning: String to TranslationTable conversion encountered errors
> > > Warning: translation table syntax error: Unknown keysym name: osfActivate
> > > Warning: ... found while parsing ':osfActivate: ManagerParentActivate()'
> > > Warning: String to TranslationTable conversion encountered errors
> > > Warning: translation table syntax error: Unknown keysym name: osfHelp
> > > Warning: ... found while parsing ':osfHelp: MenuHelp()'
> > > Warning: String to TranslationTable conversion encountered errors
> > > Warning: translation table syntax error: Unknown keysym name: osfActivate
> > > Warning: ... found while parsing ':osfActivate: PrimitiveParentActivate()'
> > > Warning: String to TranslationTable conversion encountered errors
> > > Warning: translation table syntax error: Unknown keysym name: osfActivate
> > > Warning: ... found while parsing ':osfActivate: DrawingAreaInput()
> ManagerParentActivate()'
> > > Warning: String to TranslationTable conversion encountered errors
> > > Warning: translation table syntax error: Unknown keysym name: osfUp
> > > Warning: ... found while parsing ':osfUp: DrawingAreaInput()
> ManagerGadgetTraverseUp()'
> > > Warning: String to TranslationTable conversion encountered errors
> > > Warning: translation table syntax error: Unknown keysym name: osfSelect
> > > Warning: ... found while parsing ':osfSelect: KeySelect()'
> > > Warning: String to TranslationTable conversion encountered errors
> > > Warning: translation table syntax error: Unknown keysym name: osfSelect
> > > Warning: ... found while parsing ':osfSelect: KeySelect()'
> > > Warning: String to TranslationTable conversion encountered errors
> > > Warning: translation table syntax error: Unknown keysym name: osfCancel
> > > Warning: ... found while parsing 'osfCancel: MenuEscape()'
> > > Warning: String to TranslationTable conversion encountered errors
> > > Warning: translation table syntax error: Unknown keysym name: osfBeginLine
> > > Warning: ... found while parsing ':s c osfBeginLine: ListBeginDataExtend()'
> > > Warning: String to TranslationTable conversion encountered errors
> > > Warning: translation table syntax error: Unknown keysym name: osfBeginLine
> > > Warning: ... found while parsing ':c osfBeginLine: ActionGrab(SWTopLine)'
> > > Warning: String to TranslationTable conversion encountered errors
> > > Warning: Locale not supported for XmbTextListToTextProperty
> > > Warning: Cannot convert XmString to compound text
> > > Warning: Locale not supported for XmbTextListToTextProperty
> > > Warning: Cannot convert XmString to compound text
> > > No such file: 0.172
> > >
> > > > Date: Sat, 19 Nov 2011 22:27:25 +0100
> > > > From: tg@shelx.uni-ac.gwdg.de
> > > > To: ccp4_sc@HOTMAIL.COM
> > > > CC: CCP4BB@JISCMAIL.AC.UK
> > > > Subject: Re: [ccp4bb] adxv
> > > >
> > > > -----BEGIN PGP SIGNED MESSAGE-----
> > > > Hash: SHA1
> > > >
> > > > Dear Raj,
> > > >
> > > > your first two error messages are because your 'current working
> > > > directory' is not part of your bash's PATH variable. As you login, type
> > > > export PATH=$PATH:/full/path/to/your/work/adxv
> > > > then run adxv.
> > > >
> > > > I am not sure whether this will prevent the last error to occur, but
> > > > since you can run other graphical programs there is a fair chance.
> > > >
> > > > Cheers,
> > > > Tim
> > > >
> > > > On 11/19/2011 05:53 PM, Rajesh kumar wrote:
> > > > >
> > > > > Dear All,
> > > > >
> > > > > I have connected to unix server of the lab through ssh/xming/x11. I can run open
> phenix and CCP4 GUI.
> > > > >
> > > > > I am trying to adxv to see images but I am unable to do so.
> > > > >
> > > > > I have got two files adxv and adxv.i686FC2 sitting in my work/adxv/.
> > > > >
> > > > > when i run adxv in bash
> > > > > bash: adxv: command not found
> > > > >
> > > > >
> > > > >
> > > > > when i run ./adxv in bash
> > > > > $ ./adxv /home/raj/work/wen/pin8/pin8_1_001.img
> > > > > (standard_in) 1: parse error
> > > > > (standard_in) 1: parse error
> > > > > (standard_in) 1: parse error
> > > > > beam_center x = pixels , mm
> > > > > beam_center y = pixels , mm
> > > > > distance = mm
> > > > > overload = counts
> > > > > pixelsize = 0.172 mm
> > > > > wavelength = Angstroem
> > > > >
> > > > > ./adxv: line 39: adxv.i686FC2_static: command not found
> > > > >
> > > > > when i do
> > > > > $ ./adxv.i686FC2_static /home/raj/work/wen/pin8/pin8_1_001.img
> > > > >
> > > > > -X11TransSocketINETConnect() cnat get address for loaclhost:6011: name or service
> not known
> > > > > error: cannot open display
> > > > >
> > > > > I cant use Nxclient.
> > > > >
> > > > > Thanks
> > > > > Raj
> > > > >
> > > >
> > > > - --
> > > > Dr Tim Gruene
> > > > Institut fuer anorganische Chemie
> > > > Tammannstr. 4
> > > > D-37077 Goettingen
> > > >

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: Protein-DNA complex crystallization
From: Francis E Reyes Francis {- dot -} Reyes {- at -} COLORADO {- dot -} EDU
Date: 2011-11-21

Next message:
Subject: Re: Protein-DNA complex crystallization
From: sxn214 {- at -} psu {- dot -} edu sxn214 {- at -} PSU {- dot -} EDU
Date: 2011-11-21