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Re: [ccp4bb] How to obtain specific chain protein structures without ligand?
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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999
Previous message:
Subject: How to obtain specific chain protein structures without ligand?
From: Antony Oliver antony {- dot -} oliver {- at -} ICR {- dot -} AC {- dot -} UK
Date: 2007-08-30		Next message:
Subject: Re: How to obtain specific chain protein structures without ligand?
From: Clemens Vonrhein vonrhein {- at -} GLOBALPHASING {- dot -} COM
Date: 2007-08-30


Subject: Re: How to obtain specific chain protein structures without ligand?
From: Hyunchul Kim sundol {- at -} SFC {- dot -} KEIO {- dot -} AC {- dot -} JP
Date: 2007-08-30

I need to do this for many many pdb files so, is there any methods to
get protein chain only automatically?

Best,

Hyunchul

2007-08-30 (木) の 15:16 +0100 に Antony Oliver さんは書きました:
> You could simply hand-edit the PDB file to remove the offending ligand.
>
> Regards,
>
> Tony.
>
>
>
> Hi, all
>
> I want to write a specific chain structures(protein). I tried PDBSET and
> biopython but they couldn't deal with some exceptional case.
> For example, some pdb files contain both protein structure and ligand
> structure in a given chain ID(e.g. 'A' or ' ')
>
> How can I obtain full chain structures without ligand structure by other
> methods than clicking one by one at any website.
>
> Thanks in advance.
>
> Best,
> Hyunchul Kim
>
> --
> Dr Antony W Oliver
> CR-UK DNA Repair Enzymes Group
> Section of Structural Biology
> The Institute of Cancer Research
> 237 Fulham Road
> Chelsea
> London SW3 6JB
> Phone: 020 7153 5451 / 5571
> Fax: 020 7153 5457
> E-mail: antony.oliver@icr.ac.uk
> --
>
>
>
> The Institute of Cancer Research: Royal Cancer Hospital, a charitable Company Limited by Guarantee, Registered in England under Company No. 534147 with its Registered Office at 123 Old Brompton Road, London SW7 3RP.
>
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CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999
Previous message:
Subject: How to obtain specific chain protein structures without ligand?
From: Antony Oliver antony {- dot -} oliver {- at -} ICR {- dot -} AC {- dot -} UK
Date: 2007-08-30		Next message:
Subject: Re: How to obtain specific chain protein structures without ligand?
From: Clemens Vonrhein vonrhein {- at -} GLOBALPHASING {- dot -} COM
Date: 2007-08-30
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