[ccp4bb] 3 Letter for 1'-deoxyribofurnaose-5'-phosphate?

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

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From: Jonathan Winger wingerj {- at -} BERKELEY {- dot -} EDU
Date: 2012-01-27

Subject: 3 Letter for 1'-deoxyribofurnaose-5'-phosphate?
From: James Stroud xtald00d {- at -} GMAIL {- dot -} COM
Date: 2012-01-27

Hello All,

Do any of you RNA structural biologists know what is the 3 letter code for 1'-deoxyribofurnaose-5'-phosphate (abasic site in RNA)? I found that the 1'2'-dideoxy is 3DR, but could not find a lead on the 1'-deoxy. I scoured HIC-UP to no avail, which I think is the most comprehensive hetero-compound library.

If I knew what the 3 and R stood for in "3DR" I could probably guess. I'm pretty sure the "D" stands for the 2' deoxy.

Thank you for any help!

James

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: Iphone app to display protein models
From: Shiva Bhowmik gene1267 {- at -} GMAIL {- dot -} COM
Date: 2012-01-27

Next message:
Subject: Re: Iphone app to display protein models
From: Jonathan Winger wingerj {- at -} BERKELEY {- dot -} EDU
Date: 2012-01-27