Re: [ccp4bb] 3 Letter for 1'-deoxyribofurnaose-5'-phosphate? - SOLVED!

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

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From: Jonathan Winger wingerj {- at -} BERKELEY {- dot -} EDU
Date: 2012-01-27

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Subject: Re: 3 Letter for 1'-deoxyribofurnaose-5'-phosphate? - SOLVED!
From: James Stroud xtald00d {- at -} GMAIL {- dot -} COM
Date: 2012-01-27

Hello All,

Two people named Rob told me that the the 3 letter code is "N".

http://ligand-expo.rcsb.org/reports/N/N/index.html

Coincidentally, the old 3 letter name is "ROB".

Thank you for your help!

James

> On Fri, Jan 27, 2012 at 2:38 PM, James Stroud wrote:
>> Hello All,
>>
>> Do any of you RNA structural biologists know what is the 3 letter code for 1'-deoxyribofurnaose-5'-phosphate (abasic site in RNA)? I found that the 1'2'-dideoxy is 3DR, but could not find a lead on the 1'-deoxy. I scoured HIC-UP to no avail, which I think is the most comprehensive hetero-compound library.
>>
>> If I knew what the 3 and R stood for in "3DR" I could probably guess. I'm pretty sure the "D" stands for the 2' deoxy.
>>
>> Thank you for any help!
>>
>> James

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: Iphone app to display protein models
From: Jonathan Winger wingerj {- at -} BERKELEY {- dot -} EDU
Date: 2012-01-27

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Subject: BioSAXS beamtime available
From: Richard Gillilan reg8 {- at -} CORNELL {- dot -} EDU
Date: 2012-01-27