Re: [ccp4bb] surface drawings

- Protein crystallography

Main steps:

- Protein purification
- Crystallisation

Special:

- Programs for crystallography
- X-ray detectors

Basic tutorials:

   - Chemistry
   - Protein
   - Peptide
   - Amino Acids

Xtal community:

- CCP4BB

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: Data collection of SAD (MAD) data of Copper-containing protein
From: Ana Gonzalez ana {- at -} SLAC {- dot -} STANFORD {- dot -} EDU
Date: 2007-03-16

Next message:
Subject: Re: Data collection of SAD (MAD) data of Copper-containing protein
From: Phil Jeffrey pjeffrey {- at -} PRINCETON {- dot -} EDU
Date: 2007-03-16

Subject: Re: surface drawings
From: "Arti S {- dot -} Pandey" artis {- at -} CHEMISTRY {- dot -} MONTANA {- dot -} EDU
Date: 2007-03-16

Hey Todd,
This is really easy to do with SPOCK. Like you said, you can put an atom
(say water) in your cavity and select residues within the distance of
choice from that atom. Then make a surface for these residues. Then swap
the surface and it will be the surface for the cavity. The program is
available on a trial license for one month, after which you have to buy
it.
Arti
> Hello All,
>
> I would like to make an illustration which has a semi-transparent surface
> rendering for a large cavity. I just want the suface to cover the cavity
> not the entire protein (which will most likely exist as a ribbon drawing).
> Is there a way to set a boundary for a surface drawing? By that, I mean
> pick a point within the cavity and set a radius to draw a solvent
> accessible surface and thusly only those points falling within the radius
> are shown. Seems simple enough, but I haven't quite figured it out as of
> yet.
>
> Thanks in advance for any advise.
> Todd
>

Arti S. Pandey
Graduate Student
Chemistry and Biochemistry
Montana State University
Bozeman,MT 59717

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: Data collection of SAD (MAD) data of Copper-containing protein
From: Ana Gonzalez ana {- at -} SLAC {- dot -} STANFORD {- dot -} EDU
Date: 2007-03-16

Next message:
Subject: Re: Data collection of SAD (MAD) data of Copper-containing protein
From: Phil Jeffrey pjeffrey {- at -} PRINCETON {- dot -} EDU
Date: 2007-03-16