Quick navigation: Home   |    Site Map   ||    References   |    Biography   ||    Copyright   |    Other copyright   |    Contact us   |    Advert   |   
 

Re: [ccp4bb] Can't choose full H-M symbol for conventional cell ?
- Protein crystallography

Main steps:

   - Protein purification
   - Crystallisation

Special:

   - Programs for crystallography
   - X-ray detectors

Basic tutorials:

   - Chemistry
   - Protein
   - Peptide
   - Amino Acids

Xtal community:

   - CCP4BB

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999
Previous message:
Subject: Re: Can't choose full H-M symbol for conventional cell ?
From: Jim Pflugrath jim {- dot -} pflugrath {- at -} RIGAKU {- dot -} COM
Date: 2007-03-18		Next message:
Subject: questions related to refmac refinement and map-fitting
From: lithomas lithomas {- at -} DRAGON {- dot -} NCHU {- dot -} EDU {- dot -} TW
Date: 2007-03-19


Subject: Re: Can't choose full H-M symbol for conventional cell ?
From: Petrus H Zwart PHZwart {- at -} LBL {- dot -} GOV
Date: 2007-03-18

> > For example for space group no 18 with the 'short' H-M symbol 'P 2/1 2/1
> > 2' in the setting with 'full' H-M symbol 'P 2 2/1 2/1' the programs
> > choose the correct conventional cell as say a=60, b=70, c=90
> > (according to the convention a<=b<=c).

The convention is aIf you have
(60 70 80 90 90 90) P 2 21 21
I think the reference setting (using cctbx/sginfo terminology) you are looking for is

(70 80 60 90 90 90) P 21 21 2.

If you have data in any weerd setting, using

iotbx.reflection_file_converter mydata.sca --change_basis=to_reference_setting --sca=reindexed.sca

should get you back to the reference setting.

Not sure about ccp4 programs, but programs based on the cctbx symmetry libraries, should be able to handle data in unusual settings, which is usefull in some situtaions.

HTH

Peter
ProteinCrystallography.org: Copyright 2006-2010 by Quid United Ltd